PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720360

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Trihelix

Protein Properties

Length: 341aa MW: 39987.9 Da PI: 4.5011

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720360	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.1	2.3e-13	98	182	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e ers qC+ +nl+++y+k++ +k + ss++++f++l+ 676720360 98 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSEMQCRRMVDNLKRKYRKERIKVEK-SGLGSSKWSFFNKLD 182 ***********************************777889****************9977666.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-19	97	183	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGDSEDETGY PKKFYPLNRT NHPMYSRPIS KRHAYYHEEE DDQEDEEYRQ VEEDDGGGGG 60 GGYSHRERFQ KRLKPNKPVS SSGYEFAGPS DAKLAYDWRE QEAFVLLEVW GDRFLQLGRR 120 SLRNEDWNEV AEKVSEELRS ERSEMQCRRM VDNLKRKYRK ERIKVEKSGL GSSKWSFFNK 180 LDMLLGSCPK PELGLACGVD SGEFVFMNTK VYLDKSNGFD EMMDSPGDSE EDEDDDDEYD 240 REVDYERKKS NDAASYKLLA DSVERFGKIY EKMEKSKKDQ MKELEKMRAD FQKDLELQKK 300 QIVERAQSEI ARLRQEEEEN HVDGKSEDEE MENDSDVNLS D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418742.1	1e-177	trihelix transcription factor ASIL2
TrEMBL	A0A087HCA4	0.0	A0A087HCA4_ARAAL; Uncharacterized protein
STRING	A0A087HCA4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-162	Trihelix family protein