PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676719194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31199.7 Da PI: 8.7467 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 151 | 210 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK k ++ pr+Y+rC+++ +Cpvkkkv+r+aedp++++ Yeg Hnh+ 676719194 151 VNDGYRWRKYGQKITKHNPSPRAYFRCSFSpSCPVKKKVQRNAEDPSLLVANYEGIHNHP 210 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-27 | 145 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 149 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-32 | 151 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-23 | 152 | 210 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.796 | 152 | 212 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MDYSSSLDSN TNPFDRHFAS KLQKREVSDL ASADLSRKWL VKDEEQKASM LQEELNRANS 60 ENKKLTETLA RVCENYNALH NYLEELRSRK SPEKDNFQNE QLTRKRKQDL NEFVSSSVGF 120 GGGTTDILSN EKAAVSTAYF SADKSDTSLS VNDGYRWRKY GQKITKHNPS PRAYFRCSFS 180 PSCPVKKKVQ RNAEDPSLLV ANYEGIHNHP GPHVGGSRTV KFDLVRGDLG PVEEKKETGT 240 VQEVLTQQMA SLLTNDPNFT ATLEAAISRR LTNQSIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 151 | 212 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 107 | TRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00068 | PBM | Transfer from AT2G25000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676719194 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014155.1 | 1e-147 | probable WRKY transcription factor 60 | ||||
Swissprot | Q9SK33 | 1e-136 | WRK60_ARATH; Probable WRKY transcription factor 60 | ||||
TrEMBL | V4NJP2 | 1e-145 | V4NJP2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405073.1 | 1e-146 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 1e-132 | WRKY DNA-binding protein 60 |