PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676718630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LSD | ||||||||
Protein Properties | Length: 912aa MW: 102553 Da PI: 9.7691 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.7 | 3.9e-13 | 692 | 716 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L+YPrGA++V+CalC t+ 676718630 692 CRGCRTTLMYPRGATNVCCALCRTI 716 9**********************97 PP | |||||||
2 | zf-LSD1 | 35.7 | 1.4e-11 | 729 | 752 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+t+L+Y+r A+sVRC++C+t 676718630 729 CGGCGTMLMYTRSATSVRCSCCHT 752 ***********************8 PP | |||||||
3 | zf-LSD1 | 40.8 | 3.7e-13 | 768 | 792 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr +L+YP+GA+sV+Ca+C+ V 676718630 768 CGHCRLILMYPYGASSVKCAVCQYV 792 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50878 | 11.745 | 1 | 140 | IPR000477 | Reverse transcriptase domain |
Pfam | PF00078 | 2.4E-16 | 2 | 124 | IPR000477 | Reverse transcriptase domain |
Pfam | PF13966 | 2.9E-7 | 380 | 449 | IPR026960 | Reverse transcriptase zinc-binding domain |
CDD | cd06222 | 1.16E-10 | 540 | 662 | No hit | No description |
Pfam | PF13456 | 8.9E-14 | 541 | 640 | No hit | No description |
TIGRFAMs | TIGR01053 | 5.3E-12 | 689 | 717 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-11 | 692 | 716 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.3E-13 | 726 | 756 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.4E-9 | 729 | 752 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.2E-12 | 766 | 795 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-11 | 768 | 792 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MAVKIDITKA YDKIEWYFLA SALKAYGFND QWISWVMTTR GLRQGDPLSP YLYILCADVL 60 SNLITNRAKE GKIRDIKIGN SVPPITHLLF ADDSFFFCQA NARNCRALES MFSLYEMWSG 120 QQINPGEQQE KMKSILGISS QGGGGKYLGL PEQFGRKNKE MLTNILDRVR QRTSSWNARC 180 LTQAGKEFLI KSVGLSMPKG DGSRGIPWIA WKRMQFSKKE GGLGFSDLEI FNDSLLAKQA 240 WRLIRHPHSF LARLFKARYY SDSSLLEATQ KEKQSYGWSS ILKGLEIIKK GTRLLIGDGA 300 STCVFKHNWI PTQDPTTISA PLNLTHADEN MLVQQLLVID GDSKKWNILL VLIDNIIKIY 360 LPQHQKEDRL VWHFTNSGEY SVKSGYWLTF NEHNRLVQHI ARPPGDPGLK SRIWNLRIMP 420 KLKIFLWRIL SKALGTGTRL ASRGIDMQSN THLSTYQKIL PILIMWRLWK SRCNLIFRKQ 480 RVVPQSVVQQ ACADANEWVT FQADEVGTFP NISSPSPTTV SVSPPSSTLW RRPPQGIIKC 540 NFDASFNPRT GQVVAGWMGR DEAGIVLFWG CSSLGTAMSA LEAEEKALLQ AMHQTKLKNI 600 SYVVFEGDCK ILLDNLAGKR TDCCIENICY DVQRWKHRFS TNNAFYFDSD LQFINSSINF 660 IKSNGKIPQD KTRLTLFNIF SNPKKMQEQL VCRGCRTTLM YPRGATNVCC ALCRTINPPQ 720 GMDMAHIVCG GCGTMLMYTR SATSVRCSCC HTLNLVPAHS NQNARINCGH CRLILMYPYG 780 ASSVKCAVCQ YVTHVNMGNG RAPLPMNRSN GTASVPTTMP STSTTQTVVV ENPMSLDESG 840 KLVSNVVVGV TTDRNVYRPS CYSGYCICHC RLNRFQFGLN HSVVRKAAFL ISSKITRLLS 900 AVPAIMSMNA FA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676718630 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-74 | LSD family protein |