PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718630
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LSD
Protein Properties Length: 912aa    MW: 102553 Da    PI: 9.7691
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718630genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.73.9e-13692716125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                C gCrt+L+YPrGA++V+CalC t+
  676718630 692 CRGCRTTLMYPRGATNVCCALCRTI 716
                9**********************97 PP
2zf-LSD135.71.4e-11729752124
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                CggC+t+L+Y+r A+sVRC++C+t
  676718630 729 CGGCGTMLMYTRSATSVRCSCCHT 752
                ***********************8 PP
3zf-LSD140.83.7e-13768792125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+Cr +L+YP+GA+sV+Ca+C+ V
  676718630 768 CGHCRLILMYPYGASSVKCAVCQYV 792
                **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5087811.7451140IPR000477Reverse transcriptase domain
PfamPF000782.4E-162124IPR000477Reverse transcriptase domain
PfamPF139662.9E-7380449IPR026960Reverse transcriptase zinc-binding domain
CDDcd062221.16E-10540662No hitNo description
PfamPF134568.9E-14541640No hitNo description
TIGRFAMsTIGR010535.3E-12689717IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-11692716IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.3E-13726756IPR005735Zinc finger, LSD1-type
PfamPF069432.4E-9729752IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-12766795IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-11768792IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MAVKIDITKA YDKIEWYFLA SALKAYGFND QWISWVMTTR GLRQGDPLSP YLYILCADVL  60
SNLITNRAKE GKIRDIKIGN SVPPITHLLF ADDSFFFCQA NARNCRALES MFSLYEMWSG  120
QQINPGEQQE KMKSILGISS QGGGGKYLGL PEQFGRKNKE MLTNILDRVR QRTSSWNARC  180
LTQAGKEFLI KSVGLSMPKG DGSRGIPWIA WKRMQFSKKE GGLGFSDLEI FNDSLLAKQA  240
WRLIRHPHSF LARLFKARYY SDSSLLEATQ KEKQSYGWSS ILKGLEIIKK GTRLLIGDGA  300
STCVFKHNWI PTQDPTTISA PLNLTHADEN MLVQQLLVID GDSKKWNILL VLIDNIIKIY  360
LPQHQKEDRL VWHFTNSGEY SVKSGYWLTF NEHNRLVQHI ARPPGDPGLK SRIWNLRIMP  420
KLKIFLWRIL SKALGTGTRL ASRGIDMQSN THLSTYQKIL PILIMWRLWK SRCNLIFRKQ  480
RVVPQSVVQQ ACADANEWVT FQADEVGTFP NISSPSPTTV SVSPPSSTLW RRPPQGIIKC  540
NFDASFNPRT GQVVAGWMGR DEAGIVLFWG CSSLGTAMSA LEAEEKALLQ AMHQTKLKNI  600
SYVVFEGDCK ILLDNLAGKR TDCCIENICY DVQRWKHRFS TNNAFYFDSD LQFINSSINF  660
IKSNGKIPQD KTRLTLFNIF SNPKKMQEQL VCRGCRTTLM YPRGATNVCC ALCRTINPPQ  720
GMDMAHIVCG GCGTMLMYTR SATSVRCSCC HTLNLVPAHS NQNARINCGH CRLILMYPYG  780
ASSVKCAVCQ YVTHVNMGNG RAPLPMNRSN GTASVPTTMP STSTTQTVVV ENPMSLDESG  840
KLVSNVVVGV TTDRNVYRPS CYSGYCICHC RLNRFQFGLN HSVVRKAAFL ISSKITRLLS  900
AVPAIMSMNA FA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-74LSD family protein