PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676717430

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 348aa MW: 39053.5 Da PI: 8.1731

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676717430	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.6e-32	214	269	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+ lmkv+gLt+++vkSHLQkYRl+ 676717430 214 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRYLMKVDGLTNDEVKSHLQKYRLH 269 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.626	211	271	IPR017930	Myb domain
SuperFamily	SSF46689	3.29E-17	212	272	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-27	212	272	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-26	214	269	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-7	216	267	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAKNGDMDST LKMQRCQEYV EALEQEQKKI QVFQRELPLC LELVTQAIQS CRKELSGYST 60 SEHAHGQSEC SERTTSECGG GGGTAAQVPF EEFMPIKWSS SSSDEHESCE LDKEENNGDK 120 KKSDWLRSVQ LWNQSPDTQP KEDQTATVVV KEVKRSCGAF QPFQKEKPVV ASKADSQPLK 180 AITTTPTTSS STEETVGNKR ESEEQKQSRL HHRKQRRCWS PELHRRFLHA LQQLGGSHVA 240 TPKQIRYLMK VDGLTNDEVK SHLQKYRLHT RRPTTSAVNN GGENPQQAQF MVVEGIWVPS 300 HDAANNRVYA PVAVQPPQRS SPSEQSSSRR CKSPTSSSTH TAHLLPLS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAKNGDMDST LKMQRCQEYV EALEQEQKKI QVFQRELPLC LELVTQAIQS CRKELSGYST  60
SEHAHGQSEC SERTTSECGG GGGTAAQVPF EEFMPIKWSS SSSDEHESCE LDKEENNGDK  120
KKSDWLRSVQ LWNQSPDTQP KEDQTATVVV KEVKRSCGAF QPFQKEKPVV ASKADSQPLK  180
AITTTPTTSS STEETVGNKR ESEEQKQSRL HHRKQRRCWS PELHRRFLHA LQQLGGSHVA  240
TPKQIRYLMK VDGLTNDEVK SHLQKYRLHT RRPTTSAVNN GGENPQQAQF MVVEGIWVPS  300
HDAANNRVYA PVAVQPPQRS SPSEQSSSRR CKSPTSSSTH TAHLLPLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676717430

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415885.1	1e-170	transcription factor HHO3
Swissprot	Q9FPE8	1e-162	HHO3_ARATH; Transcription factor HHO3
TrEMBL	V4L3B6	1e-169	V4L3B6_EUTSA; Uncharacterized protein
STRING	XP_006415885.1	1e-170	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-151	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]