PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707404
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 204aa    MW: 21252.6 Da    PI: 4.9969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707404genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-0582103223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC++Cg+sF ++     H+r H
  676707404  82 KCNICGRSFVSWKAVFGHLRAH 103
                7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-578106No hitNo description
PROSITE profilePS501578.78781103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
AAAQEAAVTK GKVEEAVVGE TGEPLKKKKG GRTKKPKLGD LVDTADASGS NATALAGEED  60
SAKKPKKKGS SKLTNPPEGP PKCNICGRSF VSWKAVFGHL RAHKDRGYLG FLPPPSFNAA  120
QEGFGGVVTA SSGGGGFGLG PTGLQIDLNA DPIDDEEESG PVATPRFDLN RSPPQDDVEE  180
EKKDKAEYPS SYPNGDGLIY VEDA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591069.13e-68PREDICTED: uncharacterized protein LOC106299535
RefseqXP_013649624.13e-68uncharacterized protein LOC106354269
RefseqXP_013649636.13e-68uncharacterized protein LOC106354277
TrEMBLA0A0D3A1Q36e-67A0A0D3A1Q3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7266e-67A0A3P6F726_BRAOL; Uncharacterized protein
STRINGBo1g006290.11e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.11e-31C2H2 family protein