PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60560
Common NameMICPUN_60560
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 315aa    MW: 35319.9 Da    PI: 6.8131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60560genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-09190212225
              -S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
              + + C  ++r G+C +Gd C+FaH
    60560 190 GKPVCYAYQR-GECTRGDACRFAH 212
              5789******.************* PP
2zf-CCCH253.2e-08228249426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              ++C  f+r G+C +Gd+C+F+H+
    60560 228 PICYAFQR-GECDRGDSCRFSHD 249
              79******.*************6 PP
3zf-CCCH26.51.1e-08260282427
              ---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
              ++C  f++ G+C +Gd C+F+H+p
    60560 260 APCYAFQK-GECTRGDACRFSHDP 282
              79******.*************86 PP
4zf-CCCH24.16.5e-08292313426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              ++C  f+r G+C +Gd C+F+H 
    60560 292 APCYAFQR-GECDRGDACRFSHE 313
              69******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134511.9E-21137182IPR025306Probable zinc-binding domain
PROSITE profilePS5010315.319188215IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6188214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5190213IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-7190212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5193214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61224251IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6224250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5225249IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6228249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4229250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183256283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5257281IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5257282IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6260282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4261282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587288314IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5288314IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6292313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSCQLPPRFC WSSVGILRSI EHNRSRQSPP AEHTRPVEDF TQFLRTTALP LSRRTPPRTV  60
AMAKEKKEKK EKKEKKEKKE KKEKRPAEDD AEDEPDAKKT KEEEPEVEEA NDDDEDDGFK  120
VHKKSAADAN PLSKTYEDIT LNCRDCNAEF VFTAGEQEFY NSKGWENQPT RCTECKNAKK  180
ARFGEGPSSG KPVCYAYQRG ECTRGDACRF AHEEGGGGDS RPPSRGAPIC YAFQRGECDR  240
GDSCRFSHDA NASTPQKSSA PCYAFQKGEC TRGDACRFSH DPNAEAPQRS SAPCYAFQRG  300
ECDRGDACRF SHEQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508137.10.0predicted protein
TrEMBLC1FFL80.0C1FFL8_MICCC; Uncharacterized protein
STRINGXP_002508137.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]