PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

60094

Common Name

MICPUCDRAFT_60094

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Dof

Protein Properties

Length: 354aa MW: 35021.7 Da PI: 10.0272

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60094	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.9	1.6e-36	162	219	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e +++cprC s++tkfCyynny+++qPryfC++C+ryWt+GG lrnvPvG+grrknk+ 60094 162 EGITPCPRCASEETKFCYYNNYNIKQPRYFCRGCQRYWTAGGMLRNVPVGAGRRKNKN 219 55789***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	157	218	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.549	165	219	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-31	165	219	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	167	203	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MPGPIGSSPY RASRARLARQ RLILFIFPTL TRLLPLSLLA QDAILAAAAD ELRSSSGSAN 60 GDEDDHAGKK SSPTSTIKGN SNASGKGGKG GKDAGKSGKA GNDAKPGKAK AEKSVATVAS 120 RKSTTGADGG GDKGDDAANG GDDAEPAVEL EANGRPKLPR PEGITPCPRC ASEETKFCYY 180 NNYNIKQPRY FCRGCQRYWT AGGMLRNVPV GAGRRKNKNG AGHAAGLGAH DEDPSVVAGR 240 ILASASARGH GAGGAAGAGQ LGGLAQAAAA AAAKVAAAYA MGAVGAQARD RRDGSSDGSA 300 TEAEDGAAGA GPRSDTGGFP SLRAGSEVSG AEHASGVPFA AAGARSAAAP RAV*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MPGPIGSSPY RASRARLARQ RLILFIFPTL TRLLPLSLLA QDAILAAAAD ELRSSSGSAN  60
GDEDDHAGKK SSPTSTIKGN SNASGKGGKG GKDAGKSGKA GNDAKPGKAK AEKSVATVAS  120
RKSTTGADGG GDKGDDAANG GDDAEPAVEL EANGRPKLPR PEGITPCPRC ASEETKFCYY  180
NNYNIKQPRY FCRGCQRYWT AGGMLRNVPV GAGRRKNKNG AGHAAGLGAH DEDPSVVAGR  240
ILASASARGH GAGGAAGAGQ LGGLAQAAAA AAAKVAAAYA MGAVGAQARD RRDGSSDGSA  300
TEAEDGAAGA GPRSDTGGFP SLRAGSEVSG AEHASGVPFA AAGARSAAAP RAV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060366.1	0.0	dof-like transcription factor
TrEMBL	C1MXB4	0.0	C1MXB4_MICPC; Dof-like transcription factor
STRING	XP_003060366.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4655	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	7e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	60094
Entrez Gene	9686101

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]