PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60094
Common NameMICPUCDRAFT_60094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family Dof
Protein Properties Length: 354aa    MW: 35021.7 Da    PI: 10.0272
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60094genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.91.6e-36162219360
  zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
             e +++cprC s++tkfCyynny+++qPryfC++C+ryWt+GG lrnvPvG+grrknk+
   60094 162 EGITPCPRCASEETKFCYYNNYNIKQPRYFCRGCQRYWTAGGMLRNVPVGAGRRKNKN 219
             55789***************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-24157218IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.549165219IPR003851Zinc finger, Dof-type
PfamPF027015.2E-31165219IPR003851Zinc finger, Dof-type
PROSITE patternPS013610167203IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPGPIGSSPY RASRARLARQ RLILFIFPTL TRLLPLSLLA QDAILAAAAD ELRSSSGSAN  60
GDEDDHAGKK SSPTSTIKGN SNASGKGGKG GKDAGKSGKA GNDAKPGKAK AEKSVATVAS  120
RKSTTGADGG GDKGDDAANG GDDAEPAVEL EANGRPKLPR PEGITPCPRC ASEETKFCYY  180
NNYNIKQPRY FCRGCQRYWT AGGMLRNVPV GAGRRKNKNG AGHAAGLGAH DEDPSVVAGR  240
ILASASARGH GAGGAAGAGQ LGGLAQAAAA AAAKVAAAYA MGAVGAQARD RRDGSSDGSA  300
TEAEDGAAGA GPRSDTGGFP SLRAGSEVSG AEHASGVPFA AAGARSAAAP RAV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060366.10.0dof-like transcription factor
TrEMBLC1MXB40.0C1MXB4_MICPC; Dof-like transcription factor
STRINGXP_003060366.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46551111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.17e-32Dof family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]