PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 496601 | ||||||||
Common Name | ARALYDRAFT_496601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40552.4 Da PI: 4.5213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.7 | 5.1e-45 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 l+pGfrFhPtd elv +yLk+kv gkk+++ ++i+e+diyk+eP dLp k ++ +++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+d++v ++e++g 496601 6 LAPGFRFHPTDVELVRYYLKRKVMGKKFQV-DAIAEIDIYKFEPPDLPeKsCLGTGDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGRDRDVSY-NDEVTG 106 579***************************.99**************95347777888*************************************9.9999** PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +tL+++ g+ p+g +tdWv+heyrle 496601 107 KIRTLIYHYGKIPRGDRTDWVIHEYRLE 134 **************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-53 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.123 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-24 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGKTNLAPGF RFHPTDVELV RYYLKRKVMG KKFQVDAIAE IDIYKFEPPD LPEKSCLGTG 60 DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVSY NDEVTGKIRT LIYHYGKIPR 120 GDRTDWVIHE YRLEDKVLAQ KNVPQDTYVL CVLFKKNGLG PRHGSQYGAP FKEEDWSDKE 180 EEYTQTHIVA VPCAENNNPG PSKETSLAAT ASQSHAPKDC LTGVISESCV SDVPPLTATV 240 LLPPLTSDVV AYNPMSSSAL PEVPQVSLDD GELNSLLDLF SVDNDDCLLF DDFDYQNEVR 300 HEPDVFVNEE APVFLGDGNF SGMFDLSNDM VVELQDLIQP ATPPPPPPAQ ASNPDDSRSN 360 GQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-44 | 5 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 496601 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT011822 | 0.0 | BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence. | |||
GenBank | BT015583 | 0.0 | BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871996.1 | 0.0 | NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 1e-127 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | D7MQK6 | 0.0 | D7MQK6_ARALL; ANAC103 | ||||
STRING | fgenesh2_kg.8__2417__AT5G64060.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3692 | 25 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 0.0 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | 496601 |
Entrez Gene | 9302662 |
Publications ? help Back to Top | |||
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