PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495144
Common NameARALYDRAFT_495144
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 194aa    MW: 22865.7 Da    PI: 4.6347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495144genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.6e-31171381128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel.... 99 
             lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +ev+++++++    
  495144  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVMEAGDRDcihl 109
             79*************************999..49*************6...56789*******99875....899********98766.67777644445555 PP

     NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
              g +kt++fy g++p+g+ t W+m e+rl
  495144 110 EGRRKTFAFYIGKKPRGTITPWIMYEFRL 138
             9**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-337166IPR003441NAC domain
PROSITE profilePS5100532.90217167IPR003441NAC domain
PfamPF023658.2E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME AGDRDCIHLE GRRKTFAFYI  120
GKKPRGTITP WIMYEFRLLS SRATRWSSSP LPRGEVGKWR AVKVVVKEEN EEEMVEDEHE  180
SDESDGEEVI QSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-181513915143NO APICAL MERISTEM PROTEIN
1ut4_B1e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_A1e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_B1e-181513915143NO APICAL MERISTEM PROTEIN
4dul_A1e-181513915143NAC domain-containing protein 19
4dul_B1e-181513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap495144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
GenBankBT0156690.0BT015669.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864077.11e-140NAC domain-containing protein 83
TrEMBLD7MQB41e-138D7MQB4_ARALL; ANAC097
STRINGfgenesh2_kg.8__960__AT5G50820.11e-139(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-100NAC domain containing protein 97