PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

493979

Common Name

ARALYDRAFT_493979

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 297aa MW: 34104.4 Da PI: 8.9843

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
493979	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.8	7.7e-25	1	49	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++++s +++++s+R+++i+KKA+EL++LCd++++vi+++++g+l+++++ 493979 1 SSSYSLASTSLSNRLETIFKKASELCTLCDIKACVIYYGPDGELKTWPK 49 6899*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.9E-4	1	50	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.6E-14	8	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-15	9	83	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.321	9	51	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.25E-16	14	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
SSSYSLASTS LSNRLETIFK KASELCTLCD IKACVIYYGP DGELKTWPKE REKVRDIALR 60 YSQLNEALRR KKRVNLYDFL NKKKEKGLKN PNKKRKTSLK KVNELKYPIS DHYSPDQISK 120 LIQSLELNVS KVQERLRFVE SQKHKETKPD HQSLASSSLN QQTQSLNPSQ FSLFMYNHGD 180 NTLSQIPVSA SNFNQDFSAL LQESEFKNPL VKQELCGYDQ NMCMSGITNN SFQHPCVSNK 240 EHYSAVQESV NNYELNQLLQ KEFYGCDQKL ISNINSNNFQ HPCVSNTQHN SAVQESV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	95	KKKEKGLKNPNKKRK
2	82	94	KKEKGLKNPNKKR
3	87	95	LKNPNKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	493979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	0.0	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	BT030016	0.0	BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870726.2	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-156	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJC3	0.0	D7MJC3_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.7__3412__AT5G41200.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-140	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	493979
Entrez Gene	9304747

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]