PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489647
Common NameARALYDRAFT_489647
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 607aa    MW: 69623.4 Da    PI: 6.8035
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489647genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-16100164271
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
               W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry +i++++ + 
    489647 100 WCSDEVLALLRFRSTVENWFPEF-----NWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNINNNNTND 164
               ********************998.....9***********************************999875 PP
2trihelix1055.2e-33446540186
  trihelix   1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               rW+k+evlaLi++rr          ++e++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+
    489647 446 RWPKDEVLALINIRRgisnmndddhKDENSLSSSSKAVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 540
               8**********************9999999**************************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1198166No hitNo description
PROSITE profilePS500905.65799151IPR017877Myb-like domain
CDDcd122033.89E-25445520No hitNo description
PfamPF138374.6E-19445541No hitNo description
PROSITE profilePS500906.806446513IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQAQ HMLSLDRRKI  60
IHHHHHHHHH DIKDGGATAE WIGHTDHDGD NHHHHHHHPW CSDEVLALLR FRSTVENWFP  120
EFNWEHTSRK LAEVGFKRSP QECKEKFEEE ERRYFNINNN NTNDHQHIGN YNNKGNNYRV  180
FSEVEEFYDV SSEVGDNQNK RNDSVEAKGN VGETVTGQDL MEEDKLRDHD QGQVEETSME  240
NKINSIEVGK VGNVEEDAKS SSSSSLMMII KEKEKRKRKK EKERFGVLKG FCEGLVRNMI  300
AQQEEMHKKL LEDMVKNEEE KIAREEAWKK QEIERVNKEV EIRVQEQAMA SDRNTSIIKF  360
ISKFTDHDLD VVENPTSLSQ DSSSLTLPKT QGRRKFQTIS SLLPQTLTPH NPLTHDKSLE  420
PTKTLKTKTQ TPKPPKSDDK SDLGKRWPKD EVLALINIRR GISNMNDDDH KDENSLSSSS  480
KAVPLWERIS KKMLEIGYKR SAKRCKEKWE NINKYFRKTK DVNKKRPLDS RTCPYFHQLT  540
ALYSQSSTGT TTTATTATSA GDLITRPDEE NRVGSEDPDI SVAMHVDGDG AGDKSNVQFS  600
GFDLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270279KEKEKRKRKK
2274282KRKRKKEKE
3275279RKRKK
4275280RKRKKE
5275281RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869630.0AF386963.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankAY0814840.0AY081484.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankBT0004610.0BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0083890.0BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT8M170.0AF296835.1 Arabidopsis thaliana BAC T8M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878175.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLD7M6U60.0D7M6U6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2781__AT5G28300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]