PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487745
Common NameARALYDRAFT_487745
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 412aa    MW: 45936.4 Da    PI: 4.532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487745genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.71.7e-4761341129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             l+pGfrFhPtd elv +yLk+kv gkkl + ++i+evdiyk+eP dLp +  +++++ +w+fF++r+kkya+g r+nrat+ gyWk+tgk+++vl+ ++e+vg
  487745   6 LAPGFRFHPTDVELVRYYLKRKVLGKKLLV-DAIAEVDIYKFEPPDLPdMsFIRSGDLKWHFFCPREKKYASGVRANRATECGYWKTTGKERPVLC-NSEVVG 106
             579************************999.89**************96346777888**************************************.999*** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
               ktLv++ g++p+ge+tdWvmheyrle
  487745 107 KIKTLVYHFGKSPRGERTDWVMHEYRLE 134
             **************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-573156IPR003441NAC domain
PROSITE profilePS5100552.3656156IPR003441NAC domain
PfamPF023656.1E-268133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVLG KKLLVDAIAE VDIYKFEPPD LPDMSFIRSG  60
DLKWHFFCPR EKKYASGVRA NRATECGYWK TTGKERPVLC NSEVVGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKVLTQ MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FREEDWSDEE  180
VRTDVPSTSN PTNLLEPSKE TTLALTAPDD SNKDCFGGMI SESCVSDFLP ATTNTTSKLP  240
HPSDAANTPM STAPLAETLQ TPNNDDLYSM LDLFDDDEEF LGFNNNEVRH DPGVSAPVCL  300
EEEGIFNGLP ELSNMPRTAS YDLIENSELY LELQDLTAPL NPHIGLQDLS APLNPQTGMQ  360
DLTAPLYPPT GNLNDPRSSS YLYNQGHFDF SAANDDDPYG FSASVGHRPK M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-43615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap487745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172170.0AK317217.1 Arabidopsis thaliana AT5G09330 mRNA, complete cds, clone: RAFL22-35-P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877302.10.0NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLD7M2270.0D7M227_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__879__AT5G09330.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.40.0NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]