PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487148 | ||||||||
Common Name | ARALYDRAFT_487148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 66308.4 Da PI: 7.0883 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.5 | 1e-29 | 121 | 206 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r ++ +++++f+qlea 487148 121 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 206 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 64.4 | 2.5e-20 | 422 | 507 | 1 | 82 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W +qe+l+L+e+r++m++++++ g++++ lWe++++k+ + gf +rs+ Ckekwe++++ ++k+k++ +k+++++ss+c + 487148 422 CWDEQEILKLMEIRTSMDSAFQEilgGCSDEFLWEQIASKLIQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVY 507 7*********************98889*******************999********************99999989999998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.98 | 120 | 179 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.6E-20 | 121 | 207 | No hit | No description |
CDD | cd12203 | 4.49E-19 | 121 | 186 | No hit | No description |
CDD | cd12203 | 3.47E-18 | 421 | 490 | No hit | No description |
Pfam | PF13837 | 3.8E-12 | 421 | 507 | No hit | No description |
PROSITE profile | PS50090 | 6.075 | 423 | 480 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD 60 PDMGFLPRGI HGLGGGGSST AGNNSNLNAS TSGGGGVGFS GFLDGGGFGG GGGGEGGGTG 120 RWPRQETLTL LEIRSRLDHK FKEANQKGPL WDEVSRIMSE EHGYQRSGKK CREKFENLYK 180 YYRKTKEGKA GRQDGKHYRF FRQLEALYGD SNTLVSCPNH NTQFMSSALH GFHTQNPMNV 240 TTTTSNIHNV DSVHGFHQSL SLSNNYNSSE LELMTSSSEG NDSSSRRKKR SWKAKIKEFI 300 DTNMKRLIER QDVWLEKLTK VIEDKEEQRM MKEEEWRKIE AARIDKEHLF WAKERARMEA 360 RDVAVIEALQ YLTGKPLIKP LCSSPEEING NNEIRNNSEN QNENGSDQTM TNNVSVKGSS 420 SCWDEQEILK LMEIRTSMDS AFQEILGGCS DEFLWEQIAS KLIQLGFDQR SALLCKEKWE 480 WISNGMRKEK KQINKKRKDN SSSCGVYYPR NEENPIYNNQ ESGYNDNDRH QMNEQGNVGS 540 STSNANANVT AGNPSGAMAA STNCFPFFMG DGDQNLWESY GLRLSKGENQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487148 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY555728 | 0.0 | AY555728.1 Arabidopsis thaliana trihelix transcription factor (PETAL LOSS) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871053.1 | 0.0 | trihelix transcription factor PTL isoform X1 | ||||
Swissprot | Q9LZS0 | 0.0 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | D7LWS7 | 0.0 | D7LWS7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__282__AT5G03680.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | 487148 |
Entrez Gene | 9307123 |
Publications ? help Back to Top | |||
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