PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 485441 | ||||||||
Common Name | ARALYDRAFT_485441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 250aa MW: 28532.8 Da PI: 9.9524 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.8 | 1.4e-29 | 56 | 110 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++Y+eC+kNhAas+Ggh+vDGC+Efm+ geegt +a+kCaAC+CHR+FHR+ev 485441 56 AAKYRECQKNHAASTGGHVVDGCCEFMAG-GEEGTLEAVKCAACNCHRSFHRKEVY 110 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-27 | 57 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.3E-26 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-24 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.346 | 59 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 175 | 243 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-18 | 175 | 243 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.345 | 180 | 244 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.1E-25 | 182 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MELGGKCNAI TSTTMISTEV KPHTDPEEAK PDSDPSMALF PIKKENQKPK TRVDQAAKYR 60 ECQKNHAAST GGHVVDGCCE FMAGGEEGTL EAVKCAACNC HRSFHRKEVY GHMSSKQDQL 120 IITPAFYSSN SSYKAMQTRG MHPTGEIGRR TSSSSEDMKK ILSHRNQNID GKGLMMMMMR 180 KKKRVRTKIS EEQKEKMKEF AERLGWRMQK KDEEEIDKFC RMVNLRRQVF KVWMHNNKQA 240 MKRNSNISE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-19 | 183 | 240 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 485441 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175649 | 0.0 | AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07. | |||
GenBank | AL049862 | 0.0 | AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020881625.1 | 1e-176 | zinc-finger homeodomain protein 7 | ||||
Swissprot | Q9SVL0 | 1e-160 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | D7LTK4 | 0.0 | D7LTK4_ARALL; ATHB28 | ||||
STRING | fgenesh2_kg.5__1433__AT3G50890.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13854 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 1e-162 | homeobox protein 28 |
Link Out ? help Back to Top | |
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Phytozome | 485441 |
Entrez Gene | 9312120 |