PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482537
Common NameARALYDRAFT_482537
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 190aa    MW: 21012.6 Da    PI: 7.725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-184392255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  482537 43 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 92
            59****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-2143101IPR016177DNA-binding domain
SMARTSM003801.1E-3943106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3243101IPR001471AP2/ERF domain
PROSITE profilePS5103222.57643100IPR001471AP2/ERF domain
CDDcd000188.90E-3444102No hitNo description
PRINTSPR003671.8E-104455IPR001471AP2/ERF domain
PfamPF008472.0E-114492IPR001471AP2/ERF domain
PRINTSPR003671.8E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MERDDCRRFQ DSPAQAKERR VKNNPKKKRA KDDDEKVVSK HPTFRGVRMR QWGKWVSEIR  60
EPKKKSRIWL GTFSTAEMAA RAHDVAALAI KGGSAHLNFP ELAYHLPRPA SADPKDIQAA  120
AAAAAAAMDV ETSSPSPSPT VTETSSPAMT ALSDDAFSDL PDLLLNVNHN IDGFWDSFPY  180
EEPFLSQSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1737100872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap482537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060680.0AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankAY5608450.0AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds.
GenBankBT0257540.0BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879568.11e-138ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP31e-112ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLD7LIJ51e-136D7LIJ5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1597__AT2G35700.11e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.19e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]