PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 479794 | ||||||||
Common Name | ARALYDRAFT_479794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 415aa MW: 47516.5 Da PI: 4.5947 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.1 | 1.8e-35 | 64 | 156 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ 479794 64 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKNIR 151 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ 479794 152 RRKTS 156 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 7.62E-36 | 59 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-60 | 60 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.7E-39 | 60 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.8E-19 | 64 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.3E-31 | 64 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-19 | 102 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 103 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.8E-19 | 115 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MDPSFRFIKE EFPTGFSDSP SPPSSSSSSY LYSSSMAEAA LYDPTTLSYP QPIEGLHESG 60 PPPFLTKTYD LVEDSRTNHV VSWSKSNNSF IVWDPQAFSI TLLPRFFKHN NFSSFVRQLN 120 TYGFRKVNPD RWEFANEGFL RGQKHLLKNI RRRKTSNNSN QLQQPQSSEQ QSLDNFCIEV 180 GRYGLDGEMD SLRRDKQVLM MELVRLRQQQ QSTKMYLTLI EEKLKKTESK QQQMMGFLAR 240 AMQNPDFIQQ LVEQKEKRKE IEEAISKKRQ RPIDQGKRNV VNVGDYDDAS GYVNDAAAST 300 SASASAFLDM SQETYGNMSE FEMSDLDKLA MHIQGLGDHS STREEVLNVE KGNDEEEEED 360 QQQGYQKENK EIYGEGFWED LLNEGQNFDF EGDQENVDVL IEQLGYLGSS SHTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 59 | 156 | 12 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 479794 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045974 | 0.0 | AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. | |||
GenBank | AY079374 | 0.0 | AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889509.1 | 0.0 | heat stress transcription factor A-6b | ||||
Swissprot | Q9LUH8 | 0.0 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | D7L2F7 | 0.0 | D7L2F7_ARALL; AT-HSFA6B | ||||
STRING | fgenesh2_kg.3__2495__AT3G22830.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 0.0 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | 479794 |
Entrez Gene | 9321592 |