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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
478786 |
Common Name | ARALYDRAFT_478786 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GRAS |
Protein Properties |
Length: 511aa MW: 57065.3 Da PI: 5.0337 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
478786 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 277.1 | 5.5e-85 | 145 | 510 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
++lL cA a+++++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++s+s ++ p+ + ++ +++ + l f+evsP++ + + +aN+aIl+
478786 145 EKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSSVSSSFWPVFTFASAEVKMFQKTLLKFYEVSPWFALPNNMANSAILQ 247
6899*************************************************95555555558888885444444444444********************* PP
GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
++++ + +Hi+D+++s+G+QWp+Ll+aL++Rp ++pp +RiT+v++ +++ ++g++L fA++l+++++++vl +++ ++++p
478786 248 ILAQDpiykKDLHILDIGVSHGMQWPTLLEALSCRPeGPPPCVRITVVSDLTADipfsVGPPAYNYGSQLLGFARSLKINLQISVL-------DKFQLIDTSP 343
****99988999************************55666*********9999999888999*********************96.......566889**** PP
GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
+E+l+V+++++lh l +s+++er e+Lk+++sl+Pk vv++e++ ++ s++F+++f+++ley ++++ds+++++ +e+++ Er+l++ e+++v+++
478786 344 HETLIVCVQFRLHPLK---HSIPDERGETLKALRSLRPKGVVLCENNGECsASGDFAAGFSKKLEYLWKFLDSTSSGF----KEENSEERKLMEGEATKVLMN 439
***************8...9999999************************8999********************9997....8888889999999******** PP
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
g++ +e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ + + l+Wk++++ ++S W+
478786 440 TGEM----NEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDnNWEVRMEDGDTYAGLMWKGEAVSFCSLWK 510
***9....9************************************666677777777777**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042446 | Biological Process | hormone biosynthetic process |
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGTQTWEWD QTQDPEHGFI 60 QSYSQDLSAY VGFEATNLEV VTEAPSIDLD PPPELQQQND QSRKRSRDGV IEAQQVKKSA 120 RSKRKAIKSS EKSSKDGNKE GRWAEKLLNP CALAITASNS SRVQHYLCVL SELASSSGDA 180 NRRLAAFGLR ALQHHLSSSS SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM 240 ANSAILQILA QDPIYKKDLH ILDIGVSHGM QWPTLLEALS CRPEGPPPCV RITVVSDLTA 300 DIPFSVGPPA YNYGSQLLGF ARSLKINLQI SVLDKFQLID TSPHETLIVC VQFRLHPLKH 360 SIPDERGETL KALRSLRPKG VVLCENNGEC SASGDFAAGF SKKLEYLWKF LDSTSSGFKE 420 ENSEERKLME GEATKVLMNT GEMNEGKDKW YERMREAGFA AEAFGEDAID GAKSLLRKYD 480 NNWEVRMEDG DTYAGLMWKG EAVSFCSLWK *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |