PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478786
Common NameARALYDRAFT_478786
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 511aa    MW: 57065.3 Da    PI: 5.0337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478786genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.15.5e-851455102374
    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
             ++lL  cA a+++++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++s+s  ++  p+ + ++ +++   + l  f+evsP++ + + +aN+aIl+
  478786 145 EKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSSVSSSFWPVFTFASAEVKMFQKTLLKFYEVSPWFALPNNMANSAILQ 247
             6899*************************************************95555555558888885444444444444********************* PP

    GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
              ++++    + +Hi+D+++s+G+QWp+Ll+aL++Rp ++pp +RiT+v++ +++          ++g++L  fA++l+++++++vl        +++ ++++p
  478786 248 ILAQDpiykKDLHILDIGVSHGMQWPTLLEALSCRPeGPPPCVRITVVSDLTADipfsVGPPAYNYGSQLLGFARSLKINLQISVL-------DKFQLIDTSP 343
             ****99988999************************55666*********9999999888999*********************96.......566889**** PP

    GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
             +E+l+V+++++lh l    +s+++er e+Lk+++sl+Pk vv++e++ ++  s++F+++f+++ley ++++ds+++++    +e+++ Er+l++ e+++v+++
  478786 344 HETLIVCVQFRLHPLK---HSIPDERGETLKALRSLRPKGVVLCENNGECsASGDFAAGFSKKLEYLWKFLDSTSSGF----KEENSEERKLMEGEATKVLMN 439
             ***************8...9999999************************8999********************9997....8888889999999******** PP

    GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
              g++    +e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ +  + l+Wk++++ ++S W+
  478786 440 TGEM----NEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDnNWEVRMEDGDTYAGLMWKGEAVSFCSLWK 510
             ***9....9************************************666677777777777**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.398118489IPR005202Transcription factor GRAS
PfamPF035141.9E-82145510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGTQTWEWD QTQDPEHGFI  60
QSYSQDLSAY VGFEATNLEV VTEAPSIDLD PPPELQQQND QSRKRSRDGV IEAQQVKKSA  120
RSKRKAIKSS EKSSKDGNKE GRWAEKLLNP CALAITASNS SRVQHYLCVL SELASSSGDA  180
NRRLAAFGLR ALQHHLSSSS SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM  240
ANSAILQILA QDPIYKKDLH ILDIGVSHGM QWPTLLEALS CRPEGPPPCV RITVVSDLTA  300
DIPFSVGPPA YNYGSQLLGF ARSLKINLQI SVLDKFQLID TSPHETLIVC VQFRLHPLKH  360
SIPDERGETL KALRSLRPKG VVLCENNGEC SASGDFAAGF SKKLEYLWKF LDSTSSGFKE  420
ENSEERKLME GEATKVLMNT GEMNEGKDKW YERMREAGFA AEAFGEDAID GAKSLLRKYD  480
NNWEVRMEDG DTYAGLMWKG EAVSFCSLWK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3313451077473Protein SHORT-ROOT
5b3h_B2e-3313451023419Protein SHORT-ROOT
5b3h_E2e-3313451023419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap478786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884991.10.0scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGfgenesh2_kg.3__1487__AT3G13840.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein