PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478672
Common NameARALYDRAFT_478672
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 446aa    MW: 49511.2 Da    PI: 6.113
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478672genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.45.2e-31236290155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+r+rWtpeLH++Fv+ v +L G+ekAtPk++++lm+v+gLt++hvkSHLQkYRl
   478672 236 KTRMRWTPELHDSFVKSVIKLEGPEKATPKAVMKLMNVEGLTIYHVKSHLQKYRL 290
              68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-29234291IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15235290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-22236291IPR006447Myb domain, plants
PfamPF002492.5E-7238289IPR001005SANT/Myb domain
PfamPF143793.5E-22326373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNRYSLVSTA TDECNKGVVQ TCSTSPSPVH NFLNVQPEHR KSPFIRSQSP DSTGQLWPKN  60
ISQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSIFS  120
EDLGNQCDGD NSGSLLKDFL NLSGDACSDG GFHDFGCSND SFCLSDQMEL QFLSDELELA  180
ITDRAETPRL DEIYETPLAL SNPVTRLSPS QSCVAGAMSI DVVSSHPSPG SAANHKTRMR  240
WTPELHDSFV KSVIKLEGPE KATPKAVMKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEE  300
KKNENSEEKK LALSNSEADE KKKGAIQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA  360
KYLEKMLEEQ RKTGRLICSS SSQTVLSPSD DSIPDSQNMS KTEASSPQRS TSAKKKASET  420
EEDKCESPQK RRRLENKAES EDAER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413432KKKASETEEDKCESPQKRRR
2429433KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap478672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886314.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M90.0D7L0M9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1373__AT3G13040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]