PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462969908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 348aa MW: 37805 Da PI: 9.5604 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.9e-15 | 105 | 154 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g 462969908 105 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 154 9***************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.509 | 1 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-9 | 19 | 69 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-9 | 20 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-7 | 38 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.06E-24 | 103 | 164 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-18 | 103 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-33 | 104 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 104 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 104 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-10 | 105 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
QKQPVHHRKS IDTFGQRTSQ YRGVTSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG 60 PSTHINFPLE DYQEELEEMK NMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR 120 IGRVSGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDITRYDVDK IMASNTLLPG 180 DLARRKKDDD VAATNANDAD AAAAAALAPV ADTWKIAAAL SAARAGNGGG EHQQVNQHHH 240 DVLSGEAFSS VLHDLVATGG AAQHMPMSSA TSSLVTSLSN SREGSPDRGG GLSMLFSKPS 300 PSPSQQQHHQ ASNNKPMSPS SLPPLGSWAR PAAVSIAHLP LFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462969908 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088263 | 0.0 | BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155443.1 | 1e-169 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 1e-167 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3B6C593 | 1e-172 | A0A3B6C593_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M9B6 | 1e-172 | A0A446M9B6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446M9E3 | 1e-172 | A0A446M9E3_TRITD; Uncharacterized protein | ||||
STRING | Pavir.Ba03911.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-105 | AP2 family protein |
Publications ? help Back to Top | |||
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