PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968975
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 301aa    MW: 32159.2 Da    PI: 10.6241
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968975genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.53.1e-56154247194
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre +
  462968975 154 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREGD 247
                69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-53153254IPR009072Histone-fold
SuperFamilySSF471131.06E-38157249IPR009072Histone-fold
PfamPF008086.2E-28160224IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-22188206No hitNo description
PROSITE patternPS006850191207IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.0E-22207225No hitNo description
PRINTSPR006154.0E-22226244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPKRPRGKRK RKPRKEKKRP PPPSTNHRAP VHGEPGSLHG THAAAPPAGY IYPTNGPDTP  60
TPASHPPGPP SLLQRPISHS PPHRCPARSL ASPPRSPPSP LARARHLASS LHVARAPRLY  120
KDHRMSDGPT SPGGGGGSHE SGSPRGGGGG GGGVREQDRF LPIANISRIM KKAIPANGKI  180
AKDAKETVQE CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIEPLKVYL  240
QKYREGDSKL TAKAGDGSVK KDALGHGGAS SSGPQGMNQQ GVYNQGMGYM QPQYHNGDIS  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-48155245393NF-YB
4awl_B3e-48155245494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-48155245494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118PKRPRGKRKRKPRKEKKR
2219KRPRGKRKRKPRKEKKRP
3311RPRGKRKRK
4815RKRKPRKE
5818RKRKPRKEKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968975
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983151e-176FP098315.1 Phyllostachys edulis cDNA clone: bphylf037i08, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.36e-65nuclear factor Y, subunit B8