PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462966862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 14349.3 Da PI: 8.7055 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 3.9e-39 | 33 | 123 | 1 | 90 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++++e+r da+ +++yeA+ar+rdPvyG+v++i++lqqql+ 462966862 33 PCGACKFLRRKCVNGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLHQIRPEKRVDAVVTVCYEAQARLRDPVYGCVSHIFALQQQLHDD 123 7***********************9989***********************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.998 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-38 | 33 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSTCSSVMSG GGAGGVDGSS GNGGAGGGGP GGPCGACKFL RRKCVNGCIF APYFDSDQGA 60 AHFAAVHKVF GASNVSKLLH QIRPEKRVDA VVTVCYEAQA RLRDPVYGCV SHIFALQQQL 120 HDDRIVVSSL GFLMTRRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-37 | 29 | 121 | 7 | 98 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-37 | 29 | 121 | 7 | 98 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462966862 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036180 | 1e-104 | BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400358.1 | 3e-52 | PREDICTED: LOB domain-containing protein 18-like | ||||
Refseq | XP_011094569.1 | 1e-52 | LOB domain-containing protein 18 | ||||
Swissprot | O81323 | 1e-47 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A151TBP8 | 2e-52 | A0A151TBP8_CAJCA; LOB domain-containing protein 18 | ||||
TrEMBL | A0A1E5UT08 | 2e-51 | A0A1E5UT08_9POAL; LOB domain-containing protein 18 | ||||
STRING | Pavir.Ia02614.1.p | 3e-52 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 8e-50 | LBD family protein |
Publications ? help Back to Top | |||
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