PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963623
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 594aa    MW: 64989.5 Da    PI: 6.6654
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963623genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox162e-05370430154
                TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                rrkRt +++eq++e e++   ++ +  ++   +  ++kl     ++t +q k+W  Nr+ak
  462963623 370 RRKRTIMNDEQINEIEKALVDEPEMhkNTPLLQAWSEKLsvqgpEITASQLKNWLNNRKAK 430
                89****************9986666114556889999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-5351431IPR009057Homeodomain-like
SuperFamilySSF466897.85E-5367436IPR009057Homeodomain-like
PROSITE profilePS5007110.252367434IPR001356Homeobox domain
SMARTSM003898.5E-4369438IPR001356Homeobox domain
CDDcd000860.00132370433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
RRSEARREPL PPLPPTFSSL SSSPSSAHWR GSVAEIQLAR TPLRRPKMID MVSAVEELSG  60
LTTKELSEML KESDNFILQS KTEDGGPKQE LSRNGGILSL SRTVLKLIVP ECLRGSTDIV  120
ASVSRLKAKI LAILLQLCEA ESVSYLDEVA TSPNSMQLGH TLALEVLDLL KTAFGRKQKH  180
NVDSHDKSYP MGSVLISALR LVDVFSDDSN FRSSFMTNTV VQHATSSETK EDLHPLQQPL  240
PTMASARDSS MNSIPKVEQS MEVSTPAPLI KQEATGKEET PRNSATKNGG FLQNAVGQDL  300
VHLGVARTTS AGYTPVSNVL NTGHQRIKMD LDPASSSAEH FKTPELTKES GLQEDEKGEA  360
NMYDDRQPKR RKRTIMNDEQ INEIEKALVD EPEMHKNTPL LQAWSEKLSV QGPEITASQL  420
KNWLNNRKAK LARIAKERGV PYDGEIADKP STPATHLGES SESAGEDSYL PPARVMTALG  480
ISKGSRLVSP DSSEPSRPLT RSFSFEPGRL VILIDGDGKE VGRGKISPVE GRGQGKSLVE  540
SRVCVVDITE LKIEKWGELP HPSEASGRTF QEAESRNGGV MRVAWDVSRL SPVV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979857.10.0nodulin homeobox isoform X1
RefseqXP_022684920.10.0nodulin homeobox isoform X2
TrEMBLA0A368SAE60.0A0A368SAE6_SETIT; Uncharacterized protein
TrEMBLK3ZH850.0K3ZH85_SETIT; Uncharacterized protein
STRINGPavir.J17044.1.p0.0(Panicum virgatum)
STRINGSi025937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418