PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963341
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 732aa    MW: 82222.3 Da    PI: 5.2757
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963341genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.4e-08137160327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +f++ G C  GdrC+F Hgp
  462963341 137 MVPCYYFQK-GNCIKGDRCPFYHGP 160
                789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5682453IPR000571Zinc finger, CCCH-type
SMARTSM003560.00642552IPR000571Zinc finger, CCCH-type
PfamPF156633.7E-122680No hitNo description
PROSITE profilePS5010312.1835581IPR000571Zinc finger, CCCH-type
SMARTSM003560.0415780IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5135159IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4138160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
DGAAAAGAGA EAGAKPLTPE EEALRRNTDC VYFLASPLTC KKGNECDFRH SDGARMNPRD  60
CWYWMNGNCM NPKCPFRHPP IDGLFGAPTP GVPSVSSHYG AYNSGKQMPI DGLFGAPTPG  120
VPSVSSHYGA YNSGKQMVPC YYFQKGNCIK GDRCPFYHGP QGAGNNPPEQ LARVSSFPLE  180
QPQAQKREAS TEPNNLMQQG APIIGDRSKL AVDRSMVHAA KNGVVALPSE LTSNSVKSRL  240
KSEKVPNTSA VKKSFMTAEE DHSACYQNQL APDGEPMQDW HQDFTMPPTD DLPQNSRDAD  300
DFLGESSPGF DVLVDNDADG AAYLHDEEDF GREMYPVEDY DYAPADFDTQ AHNERERFNG  360
MDEHSQIGRL YDGYERKRRR SSPERSMDRP FHSDRRYAHR EIDRADMDRS DLRHQIRRRR  420
INTYSAAISP ERNIEQHKRG EHYRERAHGG HHTHRDRHSG PRGSTLSSRL QGRIKLPGRS  480
PDRFDTRFEN ERDRKRLRDR LSPVRHDVHG GHREAGQHHE RSQRRQSELA SSVRHADVRY  540
SRRDAIDSVH LGARKNLGEP RKANGIMDSE PSLDFEGPKP LSVILQRKRE AAVSNNSSSS  600
CEKSAEAAVR QPGSLVEAEK KDSENNISSE YCKSGSGDEE YKEDEDQVPV EGQGQSSSHG  660
DKFNVEDITE VDPSTNQDAD NYEQREGESD DYETMEGQEY KSEDENAYQD DEDFDDDDDD  720
DDFAQKVGVV FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379RKRRR
2375380RKRRRS
3493499RKRLRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963341
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9710092e-89EU971009.1 Zea mays clone 355753 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
GenBankKJ7268932e-89KJ726893.1 Zea mays clone pUT3436 C3H transcription factor (C3H14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3L6PV300.0A0A3L6PV30_PANMI; Uncharacterized protein
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]