PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462960608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25363.6 Da PI: 7.0613 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.5 | 1.2e-29 | 4 | 100 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q++ 462960608 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRACLINLITAGPDHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQAAR 100 6*************************99******************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.633 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRACL INLITAGPDH 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAR RARPDTAASF ELVFSRPPSS 120 AVLVDVRQAQ PLSWAPAGQP ASQEYYSASH DAADSNTSVD TVEVSHVSQS GPEPETPREE 180 TDGREVGLDL ALGLLPTVHK TEQSWHVEKD QHDRFDEPAV KLGLGTTASR AR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462960608 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100502 | 1e-100 | FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006643695.1 | 7e-72 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 2e-60 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | J3KW27 | 2e-70 | J3KW27_ORYBR; Uncharacterized protein | ||||
STRING | OB01G11830.1 | 3e-71 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 6e-63 | LOB domain-containing protein 40 |