PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462958851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 840aa MW: 91516.9 Da PI: 5.3722 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.4e-06 | 45 | 65 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ 462958851 45 ECNMYKM-GFCPNGPTCRYKHV 65 6666666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.01 | 14 | 40 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.596 | 14 | 39 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.577 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0064 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50882 | 32.066 | 170 | 291 | IPR007275 | YTH domain |
Pfam | PF04146 | 4.1E-24 | 177 | 290 | IPR007275 | YTH domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK MGFCPNGPTC 60 RYKHVKLPGP PPPVEEVLQK ILQMRSFNKF GPHRNNIYNQ MERPHPPQGS GLPNQNSTDN 120 ATASAQAASV QQAQTMNQQT PQQQQKPNST DQAQGVSNGL SNQATRIAAP LPQGPSSCNR 180 ENLEISVQQG IWATQRSNEA KLNEAFESIE NGCAKMTSRI GGYIGGGNWK SAHGTAHYGR 240 NFSIQWLKLC ELSFQKTHHL RNPYNDNLPV KISRDCQELE PFIGEQLASL LYLEPDSELT 300 AMLTAAEAKR EEEKAKGVSA DEAADNQDIV LFDDNEEDEE EESEEEDESN GHESQGRGRG 360 RGMMWPPQMP MGRGVVPMMG GRGFPPNMMG DGFGFGGGFG MPDPFGMPRG FPPFGGPRFP 420 GDFPRGPMPG MVFPGRLPQP GGPFPMGLDM MMGPGRGPLM GGMGMGGPGR PNRPMGMAPF 480 MPPPPPNNRG AKREQRKPGG DRNDRYETSS DQGSRGHENT GNSGADGARS QSGDRYGRST 540 LRDDDSESEE EAAPRRSMPG DGSWSYALTL LLVKSRRGTV AMLTAAEAKR EEEKAKGVSA 600 DEAADNQDIV LFDDNEEDEE EESEEEDESN GHESQGRGRG RGMMWPPQMP MGRGVVPMMG 660 GRGFPPNMMG DGFGFGGGFG MPDPFGMPRG FPPFGGPRFP GDFPRGPMPG MVFPGRLPQP 720 GGPFPMGLDM MMGPGRGPLM GGMGMGGPGR PNRPMGMAPF MPPPPPNNRG AKREQRKPGG 780 DRNDRYETSS DQGSRGHENT GNSGADGARS QSGDRYGRST LRDDDSESEE EAAPRRSRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zuu_A | 2e-78 | 161 | 319 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_B | 2e-78 | 161 | 319 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_C | 2e-78 | 161 | 319 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_D | 2e-78 | 161 | 319 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462958851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657248.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 45 | ||||
Swissprot | Q0DA50 | 0.0 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | J3MGU6 | 0.0 | J3MGU6_ORYBR; Uncharacterized protein | ||||
STRING | OB06G32400.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5989 | 24 | 28 |