PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462956801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 27645.8 Da PI: 10.7859 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.2 | 1.5e-32 | 35 | 132 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ e+ 462956801 35 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYgPEK 132 89*******************************5556799**************************************************87554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-40 | 30 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-30 | 33 | 126 | No hit | No description |
SuperFamily | SSF101936 | 6.02E-32 | 33 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.48 | 35 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-29 | 35 | 127 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-24 | 35 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MRRTRALVPL QTPSRGHHSL ASPPSPAAVA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH 60 FPLQLPSAGG ESKGVLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV REKGLRAGDT 120 IVFSHSTYGP EKQLFIDCKK SKSTPTTEAA PSPSPMEKPK EARVVVRLFG VDIAGDGCQK 180 RGRPLEVALE QGQQFFKKQC MAQHHTPALG ALLLSKNQQA IDMLKSPWSR RSMEAIRTFL 240 QESRVTAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-52 | 32 | 152 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462956801 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017462 | 1e-113 | BT017462.1 Zea mays clone EL01N0407E07.c mRNA sequence. | |||
GenBank | EU969519 | 1e-113 | EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds. | |||
GenBank | KJ727870 | 1e-113 | KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968155.1 | 2e-96 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q0DXB1 | 4e-78 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
Swissprot | Q8RZX9 | 2e-76 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A0A9IZP5 | 1e-95 | A0A0A9IZP5_ARUDO; Uncharacterized protein | ||||
TrEMBL | K3XJ36 | 5e-95 | K3XJ36_SETIT; Uncharacterized protein | ||||
STRING | Si001909m | 8e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 3e-56 | related to ABI3/VP1 2 |