PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954300
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 419aa    MW: 45887.2 Da    PI: 6.1932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954300genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37e-07177198223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  462954300 177 FCSICGKGFKRDANLRMHMRGH 198
                6*******************98 PP
2zf-C2H211.30.0011295309620
                TTEEESSHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHi 20 
                Cg+sFsrk+ L  H 
  462954300 295 CGTSFSRKDKLFAHV 309
                **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-5175200No hitNo description
PROSITE profilePS5015712.092176203IPR007087Zinc finger, C2H2
SMARTSM003550.0023176198IPR015880Zinc finger, C2H2-like
PfamPF128745.7E-4177198No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6177227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
SMARTSM0035573225258IPR015880Zinc finger, C2H2-like
SMARTSM0035534263285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLDNLTFIEE KIRQVKDVIR TMVDNSGQLS YRPGELAQQQ QAVNADLTCL IVQLISTAGS  60
LLPSLKNSSF LSHPPAGHMD VANHVGSSSS MVPNTTLHSE GNNEDLCSPE EYEELFKGFT  120
DGAVEGTEID NVHVEEQDTK DGDEGGDACM DGDNLPPGSY ELLQLEKDEI LAPHTHFCSI  180
CGKGFKRDAN LRMHMRGHGD EYKSPAALAK PPRDASAEHA PVKRYSCPFI GCKRNKLHKN  240
FQPLKTILCV KNHYKRSHCE KSYTCSRCHN KKFSVMADLK THEKHCGRDK WLCSCGTSFS  300
RKDKLFAHVA LFQGHTPALP SDEPKDSSDQ VGLLGSHQEP AKLASSMGSF MWGNSSGDDS  360
ALDIKGLDSC SDDFLSTANF GSFNFSFGQL DEFVGNRSDG SFAVLGSDNI QCAQNKGGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.10.0zinc finger protein STAR3
SwissprotQ943I61e-146STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0A9JGB10.0A0A0A9JGB1_ARUDO; Uncharacterized protein
TrEMBLA0A0A9S6700.0A0A0A9S670_ARUDO; Uncharacterized protein
STRINGSi010000m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-137C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]