PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462954062

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 454aa MW: 48999.1 Da PI: 5.6238

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462954062	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	324	379	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ 462954062 324 KARRCWSPELHRKFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 379 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.039	321	381	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-16	322	382	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	322	382	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-25	324	379	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	326	377	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
SAKGGPAAVD ACIRSLEEER RKIEVFRREL PLCVRLLADV IEELKEEAAK RGEDAESKAD 60 DGDKRKWMST AQLWVDSDAK SEESEKEQQS DITSPEPKLL GGAPMPIRAV AAVPPSLPPF 120 FRTEDKVAGS VGLPGLPGGP AAVDACIRSL EEERRKIEVF RRELPLCVRL LADVIEELKE 180 EAAKRGEDAE SKADDGDKRK WMSTAQLWVD SDAKSEESEK EQQSDITSPE PKLLGGAPMP 240 IRAVAAVPPS LPPFFRTEDK VAGSVGLPGL PVLSPAVKRP LSPVPAGDEH RQNAMTRFAT 300 TMPPSGPALS LHAQTQQQQQ QARKARRCWS PELHRKFVAA LHQLGGPQVA TPKQIREVMQ 360 VDGLTNDEVK SHLQKYRLHN RRSPGATPVS QQIVLVGGLW VPKEQSSSQS GSPQGPLQFS 420 GSGSGVGTSA ATGGGDSSSS SSDEDEKSEG YSQK

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

SAKGGPAAVD ACIRSLEEER RKIEVFRREL PLCVRLLADV IEELKEEAAK RGEDAESKAD  60
DGDKRKWMST AQLWVDSDAK SEESEKEQQS DITSPEPKLL GGAPMPIRAV AAVPPSLPPF  120
FRTEDKVAGS VGLPGLPGGP AAVDACIRSL EEERRKIEVF RRELPLCVRL LADVIEELKE  180
EAAKRGEDAE SKADDGDKRK WMSTAQLWVD SDAKSEESEK EQQSDITSPE PKLLGGAPMP  240
IRAVAAVPPS LPPFFRTEDK VAGSVGLPGL PVLSPAVKRP LSPVPAGDEH RQNAMTRFAT  300
TMPPSGPALS LHAQTQQQQQ QARKARRCWS PELHRKFVAA LHQLGGPQVA TPKQIREVMQ  360
VDGLTNDEVK SHLQKYRLHN RRSPGATPVS QQIVLVGGLW VPKEQSSSQS GSPQGPLQFS  420
GSGSGVGTSA ATGGGDSSSS SSDEDEKSEG YSQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-13	324	377	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	324	377	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	324	377	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	324	377	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462954062

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792667.1	1e-146	transcription factor HHO5-like
TrEMBL	A0A059Q2Z5	1e-148	A0A059Q2Z5_9POAL; DNA binding protein
STRING	Si036412m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-40	G2-like family protein