PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953740
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 289aa    MW: 32058.1 Da    PI: 7.1712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953740genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-164894455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  462953740 48 VHNLSEKRRRSRINEKMKALQTLVPNS-----SKTDKASMLDDAIEYLKQLQ 94
               6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-2041105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-2042104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0764493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-164798No hitNo description
PfamPF000103.3E-144894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-195099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDGQQLELIV RHQSMANICD SEDALGSSES EPARQPRPRG KRTRAAEVHN LSEKRRRSRI  60
NEKMKALQTL VPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP VNLSGAPDPA  120
APSEIRTAHH LSGAKTSNSG VVLLPVNQNS AGHHLIDPPN HDQRHNKTLF LPSGPNATTV  180
ESQFLHESSQ SNLQSFELTL PPEMIFQQDM MLNARLNSDH ETPSVPGHKV DTVRQETSTV  240
NADHFGRIML RNDQSQDMVP KNSESLLLMP YLRCLQSGGP EADLRAGSK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333821e-122BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640561e-122BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankKJ7269881e-122KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804956.11e-140transcription factor EC-like isoform X1
TrEMBLA0A0A9CVL01e-140A0A0A9CVL0_ARUDO; Uncharacterized protein
STRINGPavir.J11618.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein