PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462948128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 51953.6 Da PI: 8.4001 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.1 | 1.8e-14 | 207 | 252 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq 462948128 207 HIIAERKRREKINKRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 252 889***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.202 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-17 | 206 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-17 | 207 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.13E-14 | 207 | 256 | No hit | No description |
Pfam | PF00010 | 5.8E-12 | 207 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-15 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MERFTYPRRV DKPRTPNHII SLLTILIVLL VGKMEDSSMF LQWALSTLQH GDPPPATPAP 60 AYDDDGGHTF SSSLTELLYS SSLSSSMPEK ATGHRPTSSW SSGDTDSGGG GRNASVTAAV 120 EIDGWSPSQN TVRYSAAAPP RCRTNQPVSW NFSSATARPS KEATPNSAAA SRATDDAGGS 180 VPQRVQEPPL PTRITAKGSG SSAPPFHIIA ERKRREKINK RFIELSTVIP GLKKMDKATI 240 LSDATRYVKE LQEKLKVHED GCCNGHRKVP RKKPCITVPD DEDRRSPTSY VAAMPTAATS 300 CRDTLPEIQV RISEGNVMVR IHCEDVKGVL VRLLAEVENL DLSIVHANAM PFSASTLIVN 360 ITAKASSPTH FTVEDEKHIV LWSDNHDLPV NTQYIRSKIG PTVEEGFNNT MADDIVEQLS 420 RALNQHIRNS KVEQEADRRD SRFNTFCRSI DRITCLKKSE GNRTFRDAMP IT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | ERKRRE |
2 | 211 | 216 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462948128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792499.1 | 5e-90 | transcription factor bHLH18-like | ||||
TrEMBL | A0A0A9SBV5 | 1e-108 | A0A0A9SBV5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia01059.1.p | 4e-84 | (Panicum virgatum) | ||||
STRING | GRMZM2G095899_P01 | 5e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-30 | bHLH family protein |