PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462947903

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 378aa MW: 42533.1 Da PI: 5.0471

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462947903	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.8	1.4e-11	50	124	18	98
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p +f ++h ++k +++ +lede+gr e + + +++ l++GW +F+ +++k+ D+v+F+l+++++f +v ++r 462947903 50 IPADFYQNH-LPK-LKTEFMLEDEDGRIHETIY--IGDRKGPGLSGGWGHFALFHNIKVDDVVIFQLKESKKF--KVYIVR 124 899999777.443.5579*************..66666677*********************9877777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.4E-5	37	126	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.61E-16	49	125	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.88E-13	50	124	No hit	No description
Pfam	PF02362	1.1E-8	50	124	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.714	50	126	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.9E-14	50	125	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
GHELAIVPAP QQVTVHYGDT DHATKDVIPV EDEELAIVVA DVDAVPIEGI PADFYQNHLP 60 KLKTEFMLED EDGRIHETIY IGDRKGPGLS GGWGHFALFH NIKVDDVVIF QLKESKKFKV 120 YIVREKTLDA IDGAFSQQNL EVPKKRKSSK VGASYDVNSN KDMKATTFDH NVPQSEDSSV 180 ISEDPTDGIS FSNSGTDFDG MPSFSNFSIV VDNPVDCEFE EHQRRAYYEL CCSQKSYLHK 240 NLLRHLNPKL IVGVIEDTIS IAERIRACAE EASSREDFMI WKKTLESFEL LGMNVSFMVK 300 RVNGLLGLPA LSKDLPKYEK YKDLNLEQAH SREKLKALEL ELSTVKDSLR KIDADLGEMK 360 SSAKKRDLTL QELATAPW

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

GHELAIVPAP QQVTVHYGDT DHATKDVIPV EDEELAIVVA DVDAVPIEGI PADFYQNHLP  60
KLKTEFMLED EDGRIHETIY IGDRKGPGLS GGWGHFALFH NIKVDDVVIF QLKESKKFKV  120
YIVREKTLDA IDGAFSQQNL EVPKKRKSSK VGASYDVNSN KDMKATTFDH NVPQSEDSSV  180
ISEDPTDGIS FSNSGTDFDG MPSFSNFSIV VDNPVDCEFE EHQRRAYYEL CCSQKSYLHK  240
NLLRHLNPKL IVGVIEDTIS IAERIRACAE EASSREDFMI WKKTLESFEL LGMNVSFMVK  300
RVNGLLGLPA LSKDLPKYEK YKDLNLEQAH SREKLKALEL ELSTVKDSLR KIDADLGEMK  360
SSAKKRDLTL QELATAPW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462947903

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660753.1	1e-123	B3 domain-containing protein Os01g0234100
Swissprot	Q0JP99	1e-105	Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBL	A0A368QZQ9	1e-121	A0A368QZQ9_SETIT; Uncharacterized protein
STRING	Pavir.Eb00031.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6080	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-13	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]