PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947657
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 30667 Da    PI: 7.755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947657genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.7e-18116170256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  462947657 116 RKKLRLSKEQSAFLEESFKEHATLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 170
                788899***********************************************98 PP
2HD-ZIP_I/II123.31.1e-39116206192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+ +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++ +een+rL+ke +eLr +lk
    462947657 116 RKKLRLSKEQSAFLEESFKEHATLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETRTEENRRLQKELAELR-ALK 206
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18102166IPR009057Homeodomain-like
SuperFamilySSF466891.17E-18106173IPR009057Homeodomain-like
PROSITE profilePS5007117.232112172IPR001356Homeobox domain
SMARTSM003893.6E-16114176IPR001356Homeobox domain
CDDcd000862.64E-17116173No hitNo description
PfamPF000467.2E-16116170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
SMARTSM003403.5E-22172215IPR003106Leucine zipper, homeobox-associated
PfamPF021832.6E-8172206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFGAGRCGR SSPEPPARLT LLSMVPSLGL PWQSPENGHL EASTRGFDVN RAPSCAAGEA  60
GEEDEEQDDA GAGGAALSSS PNNSAGSFPT DFSARGQAGH GGASRGSDDD DGGSARKKLR  120
LSKEQSAFLE ESFKEHATLN PKQKQALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY  180
LKRCCETRTE ENRRLQKELA ELRALKTVNP YYMHLPATTL SMCPSCERVA SNSSAPAAAA  240
ASAPASASPA PANGITTAAP EQRPSSFAAL FSSPLNRPVA AQPQAPASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364470.0BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269110.0KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696371.11e-127PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-117HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-126A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGSi030329m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-57homeobox from Arabidopsis thaliana