PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462938704
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 341aa    MW: 36556 Da    PI: 6.4153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462938704genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31163221259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  462938704 163 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 221
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247157223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.0E-31160223IPR003657WRKY domain
SuperFamilySSF1182901.31E-26161223IPR003657WRKY domain
SMARTSM007744.3E-38162222IPR003657WRKY domain
PfamPF031067.1E-26164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEAITGAAQ EGDLADVVAR AAAMAALPST SHQAPAASSP AMAGQIVMNP YEEDRRLAVM  60
FEAPSSAVDP CLSSTTAPHG GYWLPPQQLE AQISQHAYFG HDVVMTGATA DVDGDDAIIR  120
SSPVTPASAV HQMMKRKNDV KKVVCIPAPP AASSRPGGEV IPSDLWAWRK YGQKPIKGSP  180
YPRGYYRCSS SKGCMARKQV ERSRSDPNML VITYTAEHNH PWPMQRNVLA GYSRPHTHVA  240
TICKKKNSCR VDQTSPSSSS KNIDQNVFVS GDLEYQQSTN MMEGDVAAYG ACDVGGLSRE  300
SVVMPVPTSC NGIQPADEVF AALEELESSN NPVNANAYSR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24137223279Disease resistance protein RRS1
5w3x_D3e-24137223279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462938704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317942.11e-128probable WRKY transcription factor 35 isoform X2
TrEMBLA0A1E5W4D51e-137A0A1E5W4D5_9POAL; Putative WRKY transcription factor 35
STRINGSb01g000696.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-53WRKY DNA-binding protein 35