PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462934595

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 604aa MW: 65619.9 Da PI: 7.8493

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462934595	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.2e-21	35	88	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++t++q+++Le+lF+++++p+ ++r++L ++lgL+ rqVk+WFqNrR+++k 462934595 35 RYHRHTPHQIQQLEALFKESPHPDDKQRADLGRRLGLEPRQVKFWFQNRRTQMK 88 66789**********************************************998 PP
2	START	120.1	3e-38	231	346	92	206
EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190 +m+ael +lsplvp R+++f+R+++ql +g w++vdvS+d k + + ++ +++ pSg+++++++ng +kvtwveh++++++++h+l+ +l++sgla 462934595 231 LQMQAELHVLSPLVPiREVTFLRFCKQLAQGAWAVVDVSIDGLVKDQCLPASMSCRRQPSGCIVQDTPNGLCKVTWVEHTEYDEASVHQLYWPLLQSGLA 330 589************************************99888779999******************************************** PP HHHHHHHHHTXXXXXX CS START 191 egaktwvatlqrqcek 206 +ga +w+atlqrqce+ 462934595 331 FGAGRWLATLQRQCEC 346 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.92E-18	20	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.147	30	90	IPR001356	Homeobox domain
SMART	SM00389	2.9E-17	32	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.6E-19	34	92	IPR009057	Homeodomain-like
CDD	cd00086	6.65E-18	34	88	No hit	No description
Pfam	PF00046	1.6E-18	35	88	IPR001356	Homeobox domain
SMART	SM00234	3.5E-8	127	346	IPR002913	START domain
Pfam	PF01852	3.0E-32	231	346	IPR002913	START domain
SuperFamily	SSF55961	5.49E-17	232	346	No hit	No description
PROSITE profile	PS50848	23.966	239	349	IPR002913	START domain
SuperFamily	SSF55961	1.56E-17	367	589	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MSYGGLFDGG GGGAPPGAGP GVFASSPALS LALKRYHRHT PHQIQQLEAL FKESPHPDDK 60 QRADLGRRLG LEPRQVKFWF QNRRTQMKVI NHQSPRLRKE RACLLACAAV LDATDTGPSF 120 LFACLAVGLV KTLLERHENA LLKQENDKLR AENLSIREAM RNPVCGGCGG PATMFGDLSL 180 EEHHLRVENA RLRDELTRVC ALTAKFIGKP ASLMAPPPHY CTRLVVWFYF LQMQAELHVL 240 SPLVPIREVT FLRFCKQLAQ GAWAVVDVSI DGLVKDQCLP ASMSCRRQPS GCIVQDTPNG 300 LCKVTWVEHT EYDEASVHQL YWPLLQSGLA FGAGRWLATL QRQCECLAIL MSSIAVPEHD 360 SAAVTLEGKR SLLKLARRMM ENFCAGVSAS SAREWSKLDG LTSSIGADVH VMVRKSVDEP 420 GVPPGVVLSA ATSVWIPVMA ERLFNFLRNE ELRAEWDILS NGGPMQQVVR IAKGQLDGNS 480 VTLLRAAPTS TNQNSMLILQ ETCTDESGAM VVYAPVDIPA MQLVMGGGDS TYVALLPSGF 540 AILPGGPSIS GCGHKASGSL LTVAFQILVN SQPTAKLTTE SVDTVNNLIA CTIKKITAAL 600 HCDV

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MSYGGLFDGG GGGAPPGAGP GVFASSPALS LALKRYHRHT PHQIQQLEAL FKESPHPDDK  60
QRADLGRRLG LEPRQVKFWF QNRRTQMKVI NHQSPRLRKE RACLLACAAV LDATDTGPSF  120
LFACLAVGLV KTLLERHENA LLKQENDKLR AENLSIREAM RNPVCGGCGG PATMFGDLSL  180
EEHHLRVENA RLRDELTRVC ALTAKFIGKP ASLMAPPPHY CTRLVVWFYF LQMQAELHVL  240
SPLVPIREVT FLRFCKQLAQ GAWAVVDVSI DGLVKDQCLP ASMSCRRQPS GCIVQDTPNG  300
LCKVTWVEHT EYDEASVHQL YWPLLQSGLA FGAGRWLATL QRQCECLAIL MSSIAVPEHD  360
SAAVTLEGKR SLLKLARRMM ENFCAGVSAS SAREWSKLDG LTSSIGADVH VMVRKSVDEP  420
GVPPGVVLSA ATSVWIPVMA ERLFNFLRNE ELRAEWDILS NGGPMQQVVR IAKGQLDGNS  480
VTLLRAAPTS TNQNSMLILQ ETCTDESGAM VVYAPVDIPA MQLVMGGGDS TYVALLPSGF  540
AILPGGPSIS GCGHKASGSL LTVAFQILVN SQPTAKLTTE SVDTVNNLIA CTIKKITAAL  600
HCDV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462934595

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823430.1	0.0	homeobox-leucine zipper protein ROC4-like
Swissprot	Q6EPF0	0.0	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A0E0KU37	0.0	A0A0E0KU37_ORYPU; Uncharacterized protein
STRING	OPUNC04G19830.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-165	homeodomain GLABROUS 1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]