PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462928511

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

SBP

Protein Properties

Length: 827aa MW: 92739 Da PI: 7.0074

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462928511	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	1	78	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adl++ak+yhrrhkvCe+hsk++++lv +++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ 462928511 1 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKALVGNQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 78 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	31.889	1	76	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-37	1	79	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.4E-31	1	63	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.6E-30	2	75	IPR004333	Transcription factor, SBP-box
CDD	cd00204	2.28E-4	596	724	No hit	No description
Gene3D	G3DSA:1.25.40.20	7.9E-4	660	757	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MCQVDDCRAD LTSAKDYHRR HKVCEIHSKT TKALVGNQMQ RFCQQCSRFH PLAEFDEGKR 60 SCRRRLAGHN RRRRKTQPTD VASQLLLPGN QENAANRTQD IVNLITVIAR LQGTNNAGKV 120 PSIPPIPDKQ NLVEIISKIN SLNNTNSATE SPPSEETDQD PRPYLSLQLF GSVEDDIHPK 180 MDSANKYLSS ESSNPLDERS PSSSPPITHK FFPIHSVDEE DRHPRAADYR EDAAMVEVST 240 SRAWCAPPLE LFKDSERPIE NGSPPNHGYQ SCYASTSCSD HSPSSSNSDG QDRTGRIIFK 300 LFGKEPSTIP GNLRGEIINW LKHSPTEMEG YIRPGCLVLS MYLSMPAIAW DELEENLLKR 360 VNTLVQSSDV DFWRKGRFLV RTDTQLVSYK DGMTRLSKSW RTWNTPELTF VSPIAVVGGK 420 KTSLVLKGRN LTIPGTQIHC TNTGKYISKE VLCSAYPGTI YDDSGVETFD LPGEPSLTLG 480 RCFIEVENRF RGNSFPVIVA NSSVCQELRN LEVELEDSKF HDVASDDQVH DHRQPKPRDQ 540 ALHFLNELGW LFQRAAACTP STGSDVCDSD LIQFSTIRFK HLLLFSSDRD WCSLTRTLLD 600 ILAKRSMVSE ELSQEALEML SDIHLLNRAV KRKSSRMVHL LVQFVVICPD NSKLYPFVPN 660 LPGPGGLTPL HLAASIENAE DIVDALTDDP QQIGLSCWQS VLDDDGQSPE TYAKLRNHNS 720 YNELVAQKLV DRKNNQVTIM VNKGEIHMDN KSGAQALQIT SCSQCAILES GALRRPLRSR 780 GLLARPYIHS MLAIAAVCVC VCVFMRALLR FNSGRSFKWE RLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MCQVDDCRAD LTSAKDYHRR HKVCEIHSKT TKALVGNQMQ RFCQQCSRFH PLAEFDEGKR  60
SCRRRLAGHN RRRRKTQPTD VASQLLLPGN QENAANRTQD IVNLITVIAR LQGTNNAGKV  120
PSIPPIPDKQ NLVEIISKIN SLNNTNSATE SPPSEETDQD PRPYLSLQLF GSVEDDIHPK  180
MDSANKYLSS ESSNPLDERS PSSSPPITHK FFPIHSVDEE DRHPRAADYR EDAAMVEVST  240
SRAWCAPPLE LFKDSERPIE NGSPPNHGYQ SCYASTSCSD HSPSSSNSDG QDRTGRIIFK  300
LFGKEPSTIP GNLRGEIINW LKHSPTEMEG YIRPGCLVLS MYLSMPAIAW DELEENLLKR  360
VNTLVQSSDV DFWRKGRFLV RTDTQLVSYK DGMTRLSKSW RTWNTPELTF VSPIAVVGGK  420
KTSLVLKGRN LTIPGTQIHC TNTGKYISKE VLCSAYPGTI YDDSGVETFD LPGEPSLTLG  480
RCFIEVENRF RGNSFPVIVA NSSVCQELRN LEVELEDSKF HDVASDDQVH DHRQPKPRDQ  540
ALHFLNELGW LFQRAAACTP STGSDVCDSD LIQFSTIRFK HLLLFSSDRD WCSLTRTLLD  600
ILAKRSMVSE ELSQEALEML SDIHLLNRAV KRKSSRMVHL LVQFVVICPD NSKLYPFVPN  660
LPGPGGLTPL HLAASIENAE DIVDALTDDP QQIGLSCWQS VLDDDGQSPE TYAKLRNHNS  720
YNELVAQKLV DRKNNQVTIM VNKGEIHMDN KSGAQALQIT SCSQCAILES GALRRPLRSR  780
GLLARPYIHS MLAIAAVCVC VCVFMRALLR FNSGRSFKWE RLDFGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	1	75	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462928511

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973899.1	0.0	squamosa promoter-binding-like protein 15
Refseq	XP_012702492.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	K3YFY3	0.0	K3YFY3_SETIT; Uncharacterized protein
STRING	Pavir.Fb01917.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-180	squamosa promoter binding protein-like 14