PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462927948
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 747aa    MW: 83343.1 Da    PI: 6.5972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462927948genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.2e-14396475186
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k++++s+v    +l lp kf+++h  +++    + ++lede+g   + ++   + +++  l++GW++F+  + +k+gD vvF+l+g
  462927948 396 FVKEMLKSHVVHGFWLGLPAKFCNKHlpMYD----TVIVLEDENGDNHDTNY--LGAKQG--LSGGWRGFAMKHVIKVGDAVVFELMG 475
                89************************75444....57***************..888877..9**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003843.64456IPR017956AT hook, DNA-binding motif
Gene3DG3DSA:2.40.330.104.6E-7157234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-10159231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-11163231No hitNo description
SMARTSM010190.0023165248IPR003340B3 DNA binding domain
SMARTSM003841.5275287IPR017956AT hook, DNA-binding motif
Gene3DG3DSA:2.40.330.109.4E-16388478IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19390478IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-20394477No hitNo description
PfamPF023622.2E-12396475IPR003340B3 DNA binding domain
SMARTSM010192.6E-15396496IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785396496IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MEALMFEALV REFRPSYIFM HGELLRRRWS SLRCWRQVSE EDLDRKRGRP AGSKSAKSKM  60
ERKMDLVKER LAMLDSTDSS SSSSSSENDN DEDFVPMDDE LAIVVDHQPI DIHYDDTNDE  120
KKVIPKKVCD VRGRNISASF RGDCGSAMAR AKELQSKLPQ QHPSFVKEML KSHVVQGFWL  180
GLPAKFCNKH LPMYDTVIVL EDENGDNHDT NYLGAKQGLS GGRRGFAMKH GQRSGGENQK  240
SPKAFELQDS SSAGAMAIDQ SLKASSFLPL PPLLQRKRGR PAGSKSAKSK MERKMDLVKE  300
RLAMLDSTDS SSSSSSSEND NDEDFVPMDD ELAIVVDHQP IDIHYDDTGD EKKVIPKKVC  360
DVRGRNISAS FRGDCGSAMA RAKELQSKLP QQHPSFVKEM LKSHVVHGFW LGLPAKFCNK  420
HLPMYDTVIV LEDENGDNHD TNYLGAKQGL SGGWRGFAMK HVIKVGDAVV FELMGSTILP  480
GSKEPPKFKT YIVRANEFTT TDGAVSLLNL DVCKEGNLSS SPEEESAGEF KSEDLKVNTN  540
RVHGEVPLID ANGLVSEAID GIRMLDYDIE FEDVTSLSKF KIVVDRLVID CKFDKDLRRT  600
YYDLCCSQKA FLHKHLLKQL NLTLVVGVIM ETINIAEGIR ACKTEGSSRE DLLIWKKTLE  660
SFELLGMDVA FLLKRINALL GLLQTPSGGL SKLRLECAHA VEKAKALELE LSGVKDVLRR  720
MDAEMKDMES SVKKSDAALK QLATAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14350DRKRGRPA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462927948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818273.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP991e-156Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0A9PFY50.0A0A0A9PFY5_ARUDO; Uncharacterized protein
TrEMBLA0A368QZQ90.0A0A368QZQ9_SETIT; Uncharacterized protein
STRINGPavir.Eb00031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-33B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]