PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462925359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27092.6 Da PI: 6.5345 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.6 | 8.1e-21 | 180 | 221 | 1 | 41 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+++ s 462925359 180 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQIQPS 221 58***************************99********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-21 | 165 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-19 | 173 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.795 | 175 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-18 | 180 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-18 | 181 | 221 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGEVREENER LKKMLSRVTE DYQSLQMHFR EVLQQEQAKK LADTTTSLDT DIEEPGFVSL 60 RLGTSTSIHK KEAKSSIAEG NGREELMTIK EGGLTLGLSD CKVGATNSGK VQPNVLTLSP 120 EGSSEDAKDD AVETTDQWPP SKTLKNARDG DAEVEDDIGP LPQVKKARVS VRARCDAPTM 180 NDGCQWRKYG QKIAKGNPCP RAYYRCTVAA GCPVRKQIQP SVLAVYEEFK TSKWLIGMDQ 240 QLANK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462925359 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248555 | 4e-45 | AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964541.1 | 1e-121 | probable WRKY transcription factor 72 | ||||
Swissprot | A0A3Q7GFB5 | 7e-60 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A368QQA3 | 1e-119 | A0A368QQA3_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XWA9 | 1e-120 | K3XWA9_SETIT; Uncharacterized protein | ||||
STRING | Si006217m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 9e-52 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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