PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462924991
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HB-other
Protein Properties Length: 599aa    MW: 65623.3 Da    PI: 6.5914
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462924991genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox162.1e-05375435154
                TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                rrkRt +++eq++e e++   ++ +  ++   +  ++kl     ++t +q k+W  Nr+ak
  462924991 375 RRKRTIMNDEQINEIEKALVDEPEMhkNTPLLQAWSEKLsvqgpEITASQLKNWLNNRKAK 435
                89****************9986666114556889999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-5356436IPR009057Homeodomain-like
SuperFamilySSF466897.85E-5372441IPR009057Homeodomain-like
PROSITE profilePS5007110.252372439IPR001356Homeobox domain
SMARTSM003898.5E-4374443IPR001356Homeobox domain
CDDcd000869.31E-4375438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
PAGAKLAASH FLRFLLRSSS SLSSSPSPAH WRGSVAEIQL ARTPLRRPKM IDMVSAVEEL  60
SSLTTKELSE MLKEPDNFIL QSKTEDGGPK QVLLDDVKLS EQVMDLIFFL LSILAQRKKG  120
STDIVASVSR LKAKILSILL QLCEAESVSY LDEVATSPNS MQLGHTLALE VLDLLKTAFG  180
RKQTHNVDSH DKSYPMGSVL ISALRLVDVF SDDSNFRSSF MTNTVVQHAT SSETKEDLHP  240
LQQPLPTVAS ARDSSMNSIP KVEQSMEVST PAPLIKQEAT GKEETPRNSA TKNGGFLQNA  300
VGQDLVHLGV ARTTSAGYTP VSNVLNPGHQ RIKMDLDPAS SSAEHFKTPE LTKESGLQED  360
EKGEANMYDD RQPKRRKRTI MNDEQINEIE KALVDEPEMH KNTPLLQAWS EKLSVQGPEI  420
TASQLKNWLN NRKAKLARIA KERGVPYDGE IADKPSTPAT HLGESSESAG EDSYLPPARV  480
MTALGISKGS RLVSPDSSEP SRPLTRSFSF EPGRLVILID GDGKEVGRGK ISPVEGRGQG  540
KSLVESRVCV VDITELKIEK WRELPHPSEA SGRTFQEAES RNGGVMRVAW DVSRLSPVV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462924991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979857.10.0nodulin homeobox isoform X1
RefseqXP_022684920.10.0nodulin homeobox isoform X2
TrEMBLK3ZH850.0K3ZH85_SETIT; Uncharacterized protein
STRINGPavir.J17044.1.p0.0(Panicum virgatum)
STRINGSi025937m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418