PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462920013

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 359aa MW: 38503.1 Da PI: 7.6776

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462920013	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.8	9.7e-33	59	116	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++k+l+cprC+s+ tkfCy+nny+++qPr++Ck CrryWt+GG++rnvP+ +++++ 462920013 59 PDKILPCPRCNSMVTKFCYFNNYNVKQPRHYCKDCRRYWTAGGTMRNVPIVPNTKEQN 116 7899**********************************************88777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	45	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-28	61	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.751	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDAPGDPAEL AIKLFGRTIA LSDSTGAAPE SGQMETDLKP EEVKTESDGS GQEKEVKKPD 60 KILPCPRCNS MVTKFCYFNN YNVKQPRHYC KDCRRYWTAG GTMRNVPIVP NTKEQNNSLG 120 SVDNKEEKSC ATSSTVSGCS ENWVPEKTVT KEQNDGLGNG NGVKETHPHN QSNPAGHALV 180 VPRSPGWNNV ADMGSTQCST ESIDGLGNGM ASKVSLPPPQ ITPAPGLSAP AVPFPLGPPL 240 WSCIAGWPNG MWSSPRPGSN GSTLPSPPKL GKHSREETLQ GEENKGNKIW VPKAIRITDP 300 EEAAKSSILS SLGIKPDEKG VFKSFQSKVL EDGKTPEAPQ ARQANPAAVS RSQSFQERT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDAPGDPAEL AIKLFGRTIA LSDSTGAAPE SGQMETDLKP EEVKTESDGS GQEKEVKKPD  60
KILPCPRCNS MVTKFCYFNN YNVKQPRHYC KDCRRYWTAG GTMRNVPIVP NTKEQNNSLG  120
SVDNKEEKSC ATSSTVSGCS ENWVPEKTVT KEQNDGLGNG NGVKETHPHN QSNPAGHALV  180
VPRSPGWNNV ADMGSTQCST ESIDGLGNGM ASKVSLPPPQ ITPAPGLSAP AVPFPLGPPL  240
WSCIAGWPNG MWSSPRPGSN GSTLPSPPKL GKHSREETLQ GEENKGNKIW VPKAIRITDP  300
EEAAKSSILS SLGIKPDEKG VFKSFQSKVL EDGKTPEAPQ ARQANPAAVS RSQSFQERT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462920013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	1e-104	cyclic dof factor 3-like
TrEMBL	A0A1D8RJ11	1e-120	A0A1D8RJ11_ELECO; DNA-binding with one finger protein 14 (Fragment)
STRING	EMT11673	1e-102	(Aegilops tauschii)
STRING	Traes_3DS_72524290F.1	1e-102	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-56	cycling DOF factor 2