PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915243
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 581aa    MW: 64398.2 Da    PI: 6.6903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915243genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-152223031297
                HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                + + l l++++a+e+       ++t    +++g+ Wev++ + + +++  l+ GWk+F+++n+L+ gD ++F+l+g+++ +++v+v+
  462915243 222 EPCSLDLSREYADEYlP----LGMTTLTLQRNGKNWEVQC-FGRVGESKRLQCGWKQFADDNDLQLGDLCLFELVGNKKHTMNVHVI 303
                5588999*****99942....3445555677*********.666666678***************************9999*99986 PP
2B344.82.2e-144415171797
                E--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  17 vlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 l++++a+e+   g      ktlt  +++g+ Wev +  + + ++  l+ GWk+F+++n+L+ gD ++F+l+g+++ +++v+ f
  462915243 441 DLSREYADEYlplG-----MKTLT-LQRQGKNWEVHCVGWAGESK-RLQHGWKQFADDNDLQLGDLCLFELVGNKKHTMNVHEF 517
                67888998885433.....33666.556*********76555433.59**************************9998998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-18202303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-17203303IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-14208304No hitNo description
SMARTSM010195.0E-5213306IPR003340B3 DNA binding domain
PfamPF023622.2E-13224303IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462226306IPR003340B3 DNA binding domain
SMARTSM010191.7E-9426520IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-16427519IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-18427519IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-12441518IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815442520IPR003340B3 DNA binding domain
CDDcd100171.37E-13442518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MADFQGDLAL GGDVSSGESR GTVYWHRPIS LLPRLFRSPL FLSPPFSSPQ SSPATDPVVH  60
GPSTTESAVP ERRHHWRTSH HSARRRREAP SARAPEPAAP SCSRPDGPRA SPYQRRRSPP  120
PLCNHDISMK LPRSETEGCK QSESSGQRIE VVNISSSPSI SPGLVSSSED DVEAHSTPGY  180
ILESGTQLTD AQKKEMEVKV QSIQSAIPLF GCIMKGRSVF GEPCSLDLSR EYADEYLPLG  240
MTTLTLQRNG KNWEVQCFGR VGESKRLQCG WKQFADDNDL QLGDLCLFEL VGNKKHTMNV  300
HVIPMKFPRS ETEGCKQRDR SGQRIEVVNI GPLPSKPSGH VSSAEDDTEA HSLPSYILER  360
GTELTDAQKK EMEVKVRSIH SVIPLFGCIM KSSSVSGEPC TLTSAGDTSS PLQQREEYAD  420
EYLPLGMKTL TLQRQGKNWE DLSREYADEY LPLGMKTLTL QRQGKNWEVH CVGWAGESKR  480
LQHGWKQFAD DNDLQLGDLC LFELVGNKKH TMNVHEFNAD SAYRTTQLNE ETLAKFSNLE  540
TSALTSLVGS NAFSATELYR NGTLFANLHN PLNISASARL T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17686RTSHHSARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-09related to vernalization1 1