PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913990
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 401aa    MW: 44676.1 Da    PI: 6.6047
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913990genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like751e-23238281245
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                 r+rWtpeLHe+Fveav+ LGGsekAtPk+i ++mkvkgLt++h
  462913990 238 LRMRWTPELHEQFVEAVNMLGGSEKATPKAIQKVMKVKGLTIYH 281
                69****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.7E-10234281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-20236281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-15237280IPR006447Myb domain, plants
PfamPF002491.3E-6239279IPR001005SANT/Myb domain
PfamPF143791.5E-15320362IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MNQLHMGRVP TCRSSAVTLV PALSEGTFPT FPVLRPSYVE RELPDSSSTS FGASLAALQS  60
TSTITSNITS SDLHIYNEWQ SPCRKLSSGS YATEQFDPDT RLPSTYPAFK GNSSSLRMVL  120
PKLPERINWN QEPLQGEIDC PTSVYFFNQQ NVNPVGKQIE DSITMDPNGH LAERQEFFPS  180
EGSMQFLESA GSVLKAVDAR SLTPENYSYC QVQGSVPPFN SDEVSHDNLT SNTTPTKLRM  240
RWTPELHEQF VEAVNMLGGS EKATPKAIQK VMKVKGLTIY HKYRAVQHRP ESSDAGTPAK  300
RGSLSDEVPF EQSKGLKNVE GLRTQIGLQK QLYEQLEIQR KLQLQVEEHS KYLEMIIVKQ  360
SESLKKLGAL PGSQDRPHSA SDNNKACEER TQCTDSAEAR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-19237289260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913990
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454768.21e-134protein PHOSPHATE STARVATION RESPONSE 2 isoform X2
TrEMBLA0A0A9MIF30.0A0A0A9MIF3_ARUDO; Uncharacterized protein
STRINGPavir.Aa00126.1.p1e-135(Panicum virgatum)
STRINGOBART02G37080.11e-135(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.16e-43phosphate starvation response 1