PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462912040

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 235aa MW: 25854.4 Da PI: 10.4386

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462912040	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34	6e-11	109	130	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+++fp 462912040 109 LDDGYRWRKYGQKAVKNNKFPS 130 59******************96 PP
2	WRKY	36	1.4e-11	210	231	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+++fpr 462912040 210 LDDGYRWRKYGQKAVKNNKFPR 231 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-12	94	129	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-9	101	130	IPR003657	WRKY domain
PROSITE profile	PS50811	12.461	104	140	IPR003657	WRKY domain
SMART	SM00774	2.6E-6	109	158	IPR003657	WRKY domain
Pfam	PF03106	8.5E-7	110	130	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.5E-12	195	231	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-10	202	232	IPR003657	WRKY domain
PROSITE profile	PS50811	13.701	205	235	IPR003657	WRKY domain
SMART	SM00774	0.004	210	235	IPR003657	WRKY domain
Pfam	PF03106	1.2E-7	211	232	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDGNYSMLFA TQPSSSTSNS YHFMPGTSSH DHDPHVAQGA HRILSHGSFL GEHSSSKDGV 60 SPTELGESSA GGGASEADRS TAVVEKKKGG KKERRPRYAF QTRSQVDILD DGYRWRKYGQ 120 KAVKNNKFPS HDHDPHVAQG AHRILSHGSF LGEHSSSKDG VSPTELGESS AGGGASEADR 180 STAVVEKKKG GKKERRPRYA FQTRSQVDIL DDGYRWRKYG QKAVKNNKFP RVRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462912040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354853	1e-47	AK354853.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1012D01.
GenBank	AK364290	1e-47	AK364290.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023H16.
GenBank	DQ840411	1e-47	DQ840411.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 12 (WRKY12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826645.1	1e-36	probable WRKY transcription factor 75 isoform X2
Swissprot	Q9C983	9e-17	WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBL	A0A3B6APP7	1e-37	A0A3B6APP7_WHEAT; Uncharacterized protein
STRING	EMT21213	5e-36	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-19	WRKY DNA-binding protein 75

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Y,Qiu Y,Hu Y,Yu D Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa. Front Plant Sci, 2016. 7: p. 145 [PMID:26904091] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]