PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462909350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 112aa MW: 11771.1 Da PI: 8.6328 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 72.8 | 6.2e-23 | 66 | 112 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v+gC++dls+++eyhrrhkvCe+hsk+pvv+v g+eqrfCqqCsr 462909350 66 CAVDGCRSDLSRCREYHRRHKVCEAHSKTPVVVVGGQEQRFCQQCSR 112 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-23 | 61 | 112 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.033 | 63 | 112 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-22 | 65 | 112 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-17 | 66 | 112 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MDWGVASGAS SWGAAADRGP TMLSFAGPSS SSTTSIAAEI QLQDFSGPAG AGRRSRAAGR 60 GVPEACAVDG CRSDLSRCRE YHRRHKVCEA HSKTPVVVVG GQEQRFCQQC SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 1e-16 | 66 | 112 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462909350 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133608 | 2e-51 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. | |||
GenBank | AC135569 | 2e-51 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. | |||
GenBank | AP014967 | 2e-51 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450775.1 | 3e-44 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317606.1 | 3e-44 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317607.1 | 3e-44 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
TrEMBL | C5Y2L5 | 8e-43 | C5Y2L5_SORBI; Uncharacterized protein | ||||
STRING | Sb05g017510.1 | 1e-43 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-22 | SBP family protein |