PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462908510

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 356aa MW: 38787.5 Da PI: 8.4574

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462908510	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	132	181	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ +k+L 462908510 132 RKVHKAEREKLKRDHLNDLFIELGDMLDED----RQNNGKACILADTTRILKDL 181 677889*********************997....46677777777777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-11	129	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.607	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-9	131	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
AVYVPKLGEG PPPRASSSLF SPPSPYPLAQ EQRTPNSNKS IEYEKGRSQQ PRSQPSPNPR 60 VLSPIRSGAS RSRRGGEGAS RKRLIGSTEI CMPGMVPSDR GSVATAVSTA AATDKLLHGP 120 VSGKKIQKNV PRKVHKAERE KLKRDHLNDL FIELGDMLDE DRQNNGKACI LADTTRILKD 180 LLSQVESLRK ENSTLQNESH YVTTERDELR DETSALGKEI LELQNELRMR LSSNSGWGHG 240 AAESDSADAV FPLPQQVQPP SMTSPVIPLQ QPLPPQTVIE IPYAATPREL KLFPKAGFEP 300 AEGQEATNHV ARPQARYPTQ AASWTVSLFS GLPGMEEEQC SSNTTGSSKE ASTGRD

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

AVYVPKLGEG PPPRASSSLF SPPSPYPLAQ EQRTPNSNKS IEYEKGRSQQ PRSQPSPNPR  60
VLSPIRSGAS RSRRGGEGAS RKRLIGSTEI CMPGMVPSDR GSVATAVSTA AATDKLLHGP  120
VSGKKIQKNV PRKVHKAERE KLKRDHLNDL FIELGDMLDE DRQNNGKACI LADTTRILKD  180
LLSQVESLRK ENSTLQNESH YVTTERDELR DETSALGKEI LELQNELRMR LSSNSGWGHG  240
AAESDSADAV FPLPQQVQPP SMTSPVIPLQ QPLPPQTVIE IPYAATPREL KLFPKAGFEP  300
AEGQEATNHV ARPQARYPTQ AASWTVSLFS GLPGMEEEQC SSNTTGSSKE ASTGRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462908510

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148562.1	1e-116	amelogenin precursor like protein
Refseq	XP_008676027.1	1e-116	amelogenin precursor like protein isoform X1
Refseq	XP_008676033.1	1e-116	amelogenin precursor like protein isoform X1
Refseq	XP_008676036.1	1e-116	amelogenin precursor like protein isoform X1
Swissprot	Q69V10	6e-80	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	B6T4L8	1e-115	B6T4L8_MAIZE; Amelogenin like protein
STRING	GRMZM2G350312_P02	1e-116	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-35	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]