PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904336
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 297aa    MW: 31767.2 Da    PI: 6.5809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904336genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151492146
                     TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd  l+ ++ ++G+g                                  +W+tIa+ ++ gRt++++k++w++
        462904336 14 KGPWAAEEDAVLKAYIDEHGTGgnwiqlphkiggstisgqtsgmaasprsyisigsRWSTIAAQLP-GRTDNDVKNHWNT 92
                     79****************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-20535IPR009057Homeodomain-like
PROSITE profilePS5129413.926998IPR017930Myb domain
SMARTSM007171.1E-121396IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-111495IPR009057Homeodomain-like
CDDcd001671.13E-71694No hitNo description
PfamPF002491.7E-76892IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-207098IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAAE EDAVLKAYID EHGTGGNWIQ LPHKIGGSTI SGQTSGMAAS  60
PRSYISIGSR WSTIAAQLPG RTDNDVKNHW NTKLKRRLFG GGRRPRLDAR LLLTDVASSQ  120
RTSLAASALE RMHLSMRMHR RHERLESPMW PSPSPSPSPS PAVSDSSEVH LPVATSTGHS  180
GFWPRMQSSF SYACAGVQEN MDGTCTPPMS TSTGESAAPG MQSSSSTPTA SSASATFGSM  240
EDEINILLQQ IQSFEEDGGH LGEVDHETLD GSAGSWSSCS TPGVDSVFHD FVQGYNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632603e-55BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.11e-118transcription factor MYB36-like
TrEMBLA0A3L6T8501e-120A0A3L6T850_PANMI; Transcription factor MYB35-like
STRINGPavir.Aa03183.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-33myb domain protein 36