PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462902599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 129aa MW: 14577.6 Da PI: 4.8671 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 6.6e-19 | 11 | 84 | 14 | 89 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++ +p +f++e+ +++k++tl d++g+ Wev++ y+++++ +++GW eF+ n+L+ D++vF+l ++++ 462902599 11 AQINIPSEFVREYLP--QSGKKMTLWDPQGKPWEVQYVYNNQRSIAAFSGGWGEFAVGNNLEKFDVCVFELLNEDN 84 6789*********63..47789*********************99*************************876544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.084 | 1 | 93 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.01E-23 | 4 | 91 | No hit | No description |
SMART | SM01019 | 1.9E-10 | 5 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.33E-20 | 6 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-22 | 7 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-16 | 10 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEEATDSCLL AQINIPSEFV REYLPQSGKK MTLWDPQGKP WEVQYVYNNQ RSIAAFSGGW 60 GEFAVGNNLE KFDVCVFELL NEDNIKAHIY RIVLQITPLL CNKSIQPLAS NCISIGRQEG 120 EKFIHGLNG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462902599 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827675.1 | 3e-43 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_025827676.1 | 3e-43 | B3 domain-containing protein Os11g0197600-like | ||||
Swissprot | Q2R9D2 | 9e-43 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A0A9IA08 | 3e-42 | A0A0A9IA08_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A0A9NR78 | 3e-42 | A0A0A9NR78_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A2S3ID18 | 6e-42 | A0A2S3ID18_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CLC4 | 6e-42 | A0A2T7CLC4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PN77 | 5e-42 | A0A3L6PN77_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Ha01581.1.p | 3e-42 | (Panicum virgatum) | ||||
STRING | Pavir.J23006.1.p | 8e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-09 | B3 family protein |
Publications ? help Back to Top | |||
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