PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 363aa MW: 39525.6 Da PI: 8.7338 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.2e-40 | 91 | 168 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC dl akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ 462899817 91 RCQVEGCGLDLGGAKEYHRKHRVCEAHTKCPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 168 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.9E-33 | 85 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.103 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.09E-38 | 90 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.3E-31 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
PESAPARHGV DAPAARRXXX XXXXXXXXXX XXXXXXXXXX XXXPSPPLLW DWADAAAPAS 60 GSSGEAPARR GGKEREGKRA KGEDGGGGEV RCQVEGCGLD LGGAKEYHRK HRVCEAHTKC 120 PRVVVAGQER RFCQQCSRFH ALSEFDQKKR SCRRRLSDHN ARRRKPQPDA FAFASARLPS 180 SLFDDRRQIS FVWNKAPLSH VRPFTSPWDS SSDFKLPHAK EIRETSAKLG TIAGQVHMEK 240 SHLSSAIPSL THGKDELLPV KGPDTSVTAS KFDGAQDLQR ALSLLSAGSC GFPDPVQQAS 300 CLIQFSGTSE NSGDLHSSHG GSSALASCAD EQHITPQSQL VRFTMDTGSN GNDSTFFGLN 360 QMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 82 | 165 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 164 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899817 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951747.1 | 0.0 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 2e-98 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | K3YU03 | 0.0 | K3YU03_SETIT; Uncharacterized protein | ||||
STRING | Si017749m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-46 | squamosa promoter binding protein-like 2 |