PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | FAR1 | ||||||||
Protein Properties | Length: 427aa MW: 46572.9 Da PI: 7.9377 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.4 | 8.3e-07 | 141 | 185 | 1 | 46 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fYn Y+ e+GF +r +++ k+ ++itk++ +Cs++ r ++ 462897343 141 EFYNLYSWELGFGIRWNRNAKN-SGKSITKQDICCSCQKPRVKKGV 185 6*****************9999.7777*********9987766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50966 | 8.852 | 242 | 278 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MASIPAGDGG LRAGAELSRR GGDASGATAA APDVRSEVFS GPGPRATFKE AVGGXXXXXX 60 XXXXXXXXXX XXXQVVGGGG AQGSGWVRRP RFGSIPDERV PQAGRVSAYE QSLRNYAEKK 120 SSVVMNPAVS TSFDSHAEAY EFYNLYSWEL GFGIRWNRNA KNSGKSITKQ DICCSCQKPR 180 VKKGVPIEEH AAKVYTRAML EKFGETIFES GSYVVDEKEK GKAYSVRHIR SDHQESWSQL 240 EFQVIIRAED CAVICECGLG GHMGMPCCHA VKVMIHLGMQ EIPCGNIVRR WTRNARDISL 300 DHLIEHQEDM TPGMLRALKY AALYVAAMEV VNLGLSSNHA FQIAMTGLTQ AKQQVLEASR 360 VKDGIGLAEQ QRCPSAEQGS EPSSDVHDVS SVTTDDATSA AQKLSLETKV PGRKRKLLSH 420 MQADNPQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897343 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459424.2 | 3e-64 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2T7ELD8 | 1e-101 | A0A2T7ELD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03654.1.p | 5e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 1e-11 | FAR1-related sequence 12 |