PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462897023

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 878aa MW: 95447 Da PI: 6.6975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462897023	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00064	677	714	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Lek+v+++ Lq 462897023 677 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 714 67799**********66......999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.4E-24	1	143	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00562	658	714	No hit	No description
PROSITE profile	PS50888	10.487	664	713	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-4	677	722	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence Send to blast
YAVFWKAIGA ADPVHLVWED GYCGHTSCPA GSEPSEALPT EVGCSAADGT MCSLVKKVMA 60 SQVHVVGEGT VGRAAFTGNH QWIVYGTANG HGLSSEVAAE MNNQFKAGIQ TIAIIPVLPR 120 GVLQLGSTGL VMENTNFVMY AKKLCSQLNN RSGMTASASV KNASSQHGQP RPSHGAFHVQ 180 SDDHCSKISS RFPVASELRS CPDTATMSSS TSSSAFLNAS LLEDVQQDGR PFREHTFHAK 240 PDVRLEQQTP YCKSRFGSST QRADASSALI SPSLSSVQKQ SLLFSNAGLL GSGNNADLAR 300 NILLQSIVYR NSSVYENTNI NTAHGRYEVY NGGHGPANFD FLPGVGRLVR DTSLLSQVTD 360 ERCHSISGAL LQKQPVVPQL SEFSMKMDNP ERGPFQNPSA PSSVSDGQVS NSFNTIHGQD 420 DQLDRSDHIH QGQLMTDSSA HVSTQRMKNG DAHRLPDMPG ERVSSLVVDP PPDNDLFDIF 480 GAEFQQFSHN SGADLVSWSG PKSQSSDRDV PESSIYFDRS PLFSSLDNDF PYSGNFSLTD 540 TDQLLDAVIS NTNPGGKQSP VDSASCKTSL TDIPSSSHLG EKGLKQYEST GIPSVLIKHE 600 SAQIVKQPCF FDKPEDGCLS QNNGGHKSQI RLWIESGQNR KCESASASNS KGLDTPSKTN 660 RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVTKHA 720 DKLKNSTESK ILGGENGPLW KDYFEGGATW AFEVGSQSMT CPIIVEDLDR PRQMLVEMLC 780 EDRGIFLEIA DFIKGLGLTI LRGVMEVRKS KIWARFTVEA NRDVTRMEIF LSLVRLLEPN 840 CDGSGAAENA NNVKMPLGLV HQPVIPATGL SPLFLYKL

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence Send to blast

YAVFWKAIGA ADPVHLVWED GYCGHTSCPA GSEPSEALPT EVGCSAADGT MCSLVKKVMA  60
SQVHVVGEGT VGRAAFTGNH QWIVYGTANG HGLSSEVAAE MNNQFKAGIQ TIAIIPVLPR  120
GVLQLGSTGL VMENTNFVMY AKKLCSQLNN RSGMTASASV KNASSQHGQP RPSHGAFHVQ  180
SDDHCSKISS RFPVASELRS CPDTATMSSS TSSSAFLNAS LLEDVQQDGR PFREHTFHAK  240
PDVRLEQQTP YCKSRFGSST QRADASSALI SPSLSSVQKQ SLLFSNAGLL GSGNNADLAR  300
NILLQSIVYR NSSVYENTNI NTAHGRYEVY NGGHGPANFD FLPGVGRLVR DTSLLSQVTD  360
ERCHSISGAL LQKQPVVPQL SEFSMKMDNP ERGPFQNPSA PSSVSDGQVS NSFNTIHGQD  420
DQLDRSDHIH QGQLMTDSSA HVSTQRMKNG DAHRLPDMPG ERVSSLVVDP PPDNDLFDIF  480
GAEFQQFSHN SGADLVSWSG PKSQSSDRDV PESSIYFDRS PLFSSLDNDF PYSGNFSLTD  540
TDQLLDAVIS NTNPGGKQSP VDSASCKTSL TDIPSSSHLG EKGLKQYEST GIPSVLIKHE  600
SAQIVKQPCF FDKPEDGCLS QNNGGHKSQI RLWIESGQNR KCESASASNS KGLDTPSKTN  660
RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVTKHA  720
DKLKNSTESK ILGGENGPLW KDYFEGGATW AFEVGSQSMT CPIIVEDLDR PRQMLVEMLC  780
EDRGIFLEIA DFIKGLGLTI LRGVMEVRKS KIWARFTVEA NRDVTRMEIF LSLVRLLEPN  840
CDGSGAAENA NNVKMPLGLV HQPVIPATGL SPLFLYKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462897023

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978745.1	0.0	transcription factor LHW
TrEMBL	A0A1E5WE57	0.0	A0A1E5WE57_9POAL; Transcription factor LHW
STRING	Si025960m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2654	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-55	conserved peptide upstream open reading frame 7