PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 19044.8 Da PI: 9.4198 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 52 | 76 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC+ sFs ksnL +H + H 462887104 52 KCHfkDCKCSFSKKSNLDKHVKAvH 76 7*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 20 | 21 | 42 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.3E-4 | 32 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.38E-6 | 32 | 88 | No hit | No description |
SMART | SM00355 | 0.11 | 51 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.884 | 51 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.0E-6 | 75 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.829 | 82 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3 | 82 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKTFTNVECL MAHKQSCHQH VQCDVCGTKQ LKKNFKRHCR MHEGSCVTER IKCHFKDCKC 60 SFSKKSNLDK HVKAVHEQHR PFVCRFSGCG KKFSYKHVRD NHEKSSAHVY IEGDFEADEQ 120 QRHSAGGRKR KRITVESLMG KRVAAPDDAP APEDGIEYLR WLLSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887104 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960333.1 | 3e-94 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 8e-47 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | K3Z744 | 7e-93 | K3Z744_SETIT; Uncharacterized protein | ||||
STRING | Si022364m | 1e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2382 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-41 | transcription factor IIIA |